DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and pax3

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_012825755.1 Gene:pax3 / 448464 XenbaseID:XB-GENE-482740 Length:486 Species:Xenopus tropicalis


Alignment Length:778 Identity:205/778 - (26%)
Similarity:281/778 - (36%) Gaps:353/778 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 VNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRAIG 165
            ||||||||:.|||||:..|.||||:||.|.|||.|||.|:||:|||||||.||.|||||||.|||
 Frog    39 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIG 103

  Fly   166 GSKPR-VATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQKEQ 229
            ||||: |.|.||..||.::||:.|.:|:|||||:||::.||..:.:||||||:|:||        
 Frog   104 GSKPKQVTTPEVEKKIEEFKRDNPGMFSWEIRDKLLKDGVCDRNTVPSVSSISRILR-------- 160

  Fly   230 QSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESGGASNSGE 294
                                                                        |..|:
 Frog   161 ------------------------------------------------------------SKFGK 165

  Fly   295 GSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVHGNHQALQQHQQQS 359
            |.|::...::                                                 :.|::|
 Frog   166 GDEEDIELDR-------------------------------------------------KEQEES 181

  Fly   360 WPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNCPVATE 424
                                                                             
 Frog   182 ----------------------------------------------------------------- 181

  Fly   425 DIHLKKELDGHQSDET-GSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEK 488
            :...|..:||...:.. .|.|.|.        |:..|.:..|.||||.:|:||:||.:|::.||:
 Frog   182 EKRAKHSIDGILRERAPASPESEE--------GSDIDSEPDLPLKRKQRRSRTTFTAEQLEELER 238

  Fly   489 EFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNSTGASATSSSTSA 553
            .||||||||::.||.||.:..|.|||:|||||||||:||::            .||         
 Frog   239 AFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ------------AGA--------- 282

  Fly   554 TASLTDSPNSLSACSSLLSGS---AGGPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIP 615
                    |.|.|.:.|:.|:   |..|::.|..       ||            ::|..||.| 
 Frog   283 --------NQLMAFNHLIPGAFPPAAMPALPTYQ-------LS------------ETSYQPTSI- 319

  Fly   616 HIRPSCTSDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHAQGHALVPAISPRLNFNSGSF 680
               |...||..|        .|..|.||                          .|         
 Frog   320 ---PQAVSDPSN--------TVHRPQPL--------------------------PP--------- 338

  Fly   681 GAMYSNMHHTALSMSDSYGAVTPIPSFNH---SAVGPLAPPSPIPQQGDLTPSSLYPCHMTLRPP 742
                |::|.::|..:....:...:||..|   |......|||        .||:           
 Frog   339 ----SSVHQSSLPSNPESSSAYCLPSGRHGFSSYTDSFVPPS--------GPSN----------- 380

  Fly   743 PMAPAHHHIVPGDGGRPAGVGLGSGQSANLGASCSGSGYEVLSAYALPP------PPMASSSAAD 801
            ||.||     .|:|..|..:||    ..|.|    |..::..:.|||.|      ||.|.|::..
 Frog   381 PMNPA-----IGNGLSPQVMGL----LTNHG----GVPHQPQTDYALSPLTGGLEPPTAVSASCS 432

  Fly   802 SSFSAASSASANVTPHHTIAQESCPSPCSSASHFGVAHSSGFSSDPISPAVSSYAHMSYNYAS 864
            .......|..:..|     :|..||...|         :||:|.:|    |:.|.:..|..::
 Frog   433 QRLEHMKSLDSLST-----SQSYCPPTYS---------TSGYSMEP----VTGYQYPQYGQSA 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 79/120 (66%)
Homeobox 475..527 CDD:278475 32/51 (63%)
pax3XP_012825755.1 PAX 35..162 CDD:238076 81/190 (43%)
Homeobox 224..278 CDD:365835 33/53 (62%)
Pax7 349..393 CDD:372070 15/67 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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