DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ey and pax6

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_031755865.1 Gene:pax6 / 448447 XenbaseID:XB-GENE-484088 Length:469 Species:Xenopus tropicalis


Alignment Length:597 Identity:256/597 - (42%)
Similarity:298/597 - (49%) Gaps:207/597 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 HSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQ--------------VSNGCVSK 148
            ||||||||||||.||||||||||||||||||||||||||||||              ||||||||
 Frog    36 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQSHADAKVPVLDSQNVSNGCVSK 100

  Fly   149 ILGRYYETGSIRPRAIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSV 213
            |||||||||||||||||||||||||.||||||:|||||||||||||||||||.|.||||||||||
 Frog   101 ILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 165

  Fly   214 SSINRVLRNLAAQKEQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTA 278
            |||||||||||::|:|.                                                
 Frog   166 SSINRVLRNLASEKQQM------------------------------------------------ 182

  Fly   279 TPLNSSESGGASNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQ 343
                     ||         :.:|:|||:||                   ||:    ||..:.| 
 Frog   183 ---------GA---------DGMYDKLRMLN-------------------GQT----GTWGTRP- 205

  Fly   344 LVHGNHQALQQHQQQSWPPRHYSGSWYP-TSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDI 407
                                    .||| ||:...|..                           
 Frog   206 ------------------------GWYPGTSVPGQPAQ--------------------------- 219

  Fly   408 ESLASIGHQRNCPVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQ 472
                                     ||.|..| |.|.|||:|..:||..::::.|.||.||||||
 Frog   220 -------------------------DGCQPQE-GGGGGENTNSISSNGEDSDEAQMRLQLKRKLQ 258

  Fly   473 RNRTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRR 537
            |||||||.:||::||||||||||||||||||||.||.||||||||||||||||||||||||||||
 Frog   259 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRR 323

  Fly   538 TPNSTGASATSSSTSATASLTDSPNSLSACSSLLSGS-AGGPSVSTINGLSS----PS-TLSTNV 596
            ..::|.:....||:.:|:.....|...:..||..||| .|....:..|..|:    || |:..|:
 Frog   324 QASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNSYSALPPMPSFTMGNNL 388

  Fly   597 NAPTLGAGIDSSESPTPIPHIRPSC---TSDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNG 658
                      ..:.|.|......||   ||.:.|||..:      :..|..:..|.|:..:.::|
 Frog   389 ----------PMQPPVPSQTSSYSCMLPTSPSVNGRSYD------TYTPPHMQTHMNSQPMGTSG 437

  Fly   659 HAQGHALVPAIS 670
            .|....:.|.:|
 Frog   438 TASTGLISPGVS 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 117/136 (86%)
Homeobox 475..527 CDD:278475 45/51 (88%)
pax6XP_031755865.1 PAX 35..173 CDD:128645 117/136 (86%)
Homeobox 261..314 CDD:395001 46/52 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 232 1.000 Domainoid score I2370
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1152885at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45636
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

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