DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and lhx6a

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_001004015.1 Gene:lhx6a / 445565 ZFINID:ZDB-GENE-041025-1 Length:375 Species:Danio rerio


Alignment Length:367 Identity:77/367 - (20%)
Similarity:119/367 - (32%) Gaps:131/367 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   331 SPNHLGTRSSHPQLVHGNH-QALQQHQQQSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASG 394
            ||:...|..: .:.|.|.| ||:.|...:|    |.|......:.|.....|.|:|.|.|:.||.
Zfish    29 SPDSHSTPGA-SRCVDGQHGQAMSQSDGES----HRSNMEKDDTRSSPSPPSTPSICSPTSTASS 88

  Fly   395 -PSLAHSLSPPNDIESL-----------------------ASIGHQRNCPVATEDI--------- 426
             ||...::.....:|.|                       .|:....:|.:..::|         
Zfish    89 VPSTGKNVCASCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQHSSCYIKNKEIFCKMDYFSR 153

  Fly   427 --------------------------HL--------KKELDGHQSDETG---------------- 441
                                      ||        |::|.  ..:|.|                
Zfish   154 FGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLS--TGEEFGLVEEKVLCRIHYDTMV 216

  Fly   442 --------SGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEKEFERTHYPDV 498
                    ||.|....|.   :.:.:|.|     .:..:|.|||||.:|:..::.:|.:.:.||.
Zfish   217 ENLKRAAESGSGLTLEGA---VPSEQDSQ-----PKPAKRARTSFTAEQLQVMQAQFAQDNNPDA 273

  Fly   499 FARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNSTGASATSSSTSATASLTD---- 559
            ...::||...||....|||||.|.||        |:::.||...|............||.|    
Zfish   274 QTLQKLADMTGLSRRVIQVWFQNCRA--------RHKKHTPQHNGPPQAHPQARMPPSLPDELHY 330

  Fly   560 SPNSLSACSSLLSGSAGGPSVSTINGL--SSPSTLSTNVNAP 599
            ||          .||.....:..::|.  |.|.::.|..:.|
Zfish   331 SP----------FGSPERARMVALHGYIDSHPFSVLTTQSLP 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645
Homeobox 475..527 CDD:278475 21/51 (41%)
lhx6aNP_001004015.1 LIM1_Lhx6 97..150 CDD:188766 5/52 (10%)
LIM2_Lhx6 158..212 CDD:188768 6/55 (11%)
Homeobox 250..302 CDD:278475 22/59 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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