DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and Nkx2-4

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_038962557.1 Gene:Nkx2-4 / 366213 RGDID:1304985 Length:353 Species:Rattus norvegicus


Alignment Length:417 Identity:78/417 - (18%)
Similarity:129/417 - (30%) Gaps:126/417 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 SISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESGGASNSGEGSEQEAIYEKLRLL 308
            |:|.|.:...  :||::.|....|......:|..|.|...:..|.|:                  
  Rat     2 SLSPKHTTPF--SVSDILSPIEETYKKFGGVMDGAPPGLGAPLGAAA------------------ 46

  Fly   309 NTQHAAGP-GPLEPARAAPLVGQSPNHLGTRSSHPQLVHGNHQALQQHQQQSWPPRHYSGSWYPT 372
               :.|.| ||  .::||.:.|..|.|          ....|.|.......:......:....|.
  Rat    47 ---YRAPPTGP--SSQAAAVAGMQPPH----------AMAGHNAAAAAAAAAAAAAAAATYHMPP 96

  Fly   373 SLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNCPVATEDIHLKKELDGHQS 437
            .:|:.|.|      ::.:|.:|                 .:|:....|..|:.:.     .|..:
  Rat    97 GVSQFPHS------AMGSYCNG-----------------GLGNMGELPAYTDGMR-----GGAAA 133

  Fly   438 DETG--------------------SGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQ 482
            ..||                    :|......|..:.|.:.....|.|......::.|..|:..|
  Rat   134 AATGWYGANTDPRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLAPLHAAAPRRKRRVLFSQAQ 198

  Fly   483 IDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLR-------------- 533
            :..||:.|::..|.....||.||..|.|...::::||.|.|.|.:|:.|.:              
  Rat   199 VYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGLGPP 263

  Fly   534 ------NQRRT----------PNSTGASATSSSTSATASLTDSPNS----LSACSSLLSGSAGGP 578
                  :.||.          |...||...:...........:|.|    ||:....|.|..|  
  Rat   264 PPPPPPSPRRVAVPVLVKDGKPCQNGAGTPTPGQGGQQPQAPTPASELEELSSSPPALHGPGG-- 326

  Fly   579 SVSTINGLSSPSTLSTNVNAPTLGAGI 605
                  ||::..|.:.:.....|||.:
  Rat   327 ------GLAALDTATGDYGGGVLGANL 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645
Homeobox 475..527 CDD:278475 18/51 (35%)
Nkx2-4XP_038962557.1 Homeobox 190..244 CDD:395001 18/53 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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