DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and Vsx1

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_001284898.1 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster


Alignment Length:667 Identity:156/667 - (23%)
Similarity:224/667 - (33%) Gaps:182/667 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 AQKEQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPL--NSSESG 287
            |..::||....|||:..|.|         ||:    .|||.|...:|..|....:|.  |....|
  Fly   198 ASGDEQSPSKNSSSSGNGGS---------GGS----GSGSGGGNPTSNGLGHLGSPTASNGGSGG 249

  Fly   288 GA--SNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLV----- 345
            ||  ..||.||.......     :|....|.|....:|::|   ..|:|....::|....     
  Fly   250 GAGVGGSGGGSGTSGSNS-----STSGNGGNGGSSGSRSSP---AGPHHSAALAAHQHAAAAAAA 306

  Fly   346 ------------HGNHQALQQHQQQSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLA 398
                        |.:|...|.|..                       :..::.:..|:|:..:.|
  Fly   307 AHHHAAAAAAAHHAHHAHAQAHAH-----------------------AHAHVHAHAAHAAHAAHA 348

  Fly   399 HSLSPPNDIESLASIGHQRNCPVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQA 463
            |:......:.:....|...|..:|           .|..|.. .|.|....||..          
  Fly   349 HAHHAEAFLGAAGGAGGNPNSLLA-----------AHGGDVL-VGPGGTGPGGKK---------- 391

  Fly   464 RLILKRKLQRNRTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRR 528
                |.|.:..||.||:.|::.|||.|:..|||||.|||.|:.|.||.|.|||||:.|||||||:
  Fly   392 ----KNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRK 452

  Fly   529 EEK-----------------LRNQRRTPNSTGASATSSSTSATASLTDSPNSLSACSSLLSGSAG 576
            .||                 :|:....|.:...||....:.|...|.....||.|...|.|..:.
  Fly   453 TEKCWGHSTKMAEYGLYGAMVRHSLPLPETIIKSAKEDESVAPWLLGMHKKSLEAAELLKSDESD 517

  Fly   577 GPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIPHIRPSCTSDNDNGRQSEDCRRVCSPC 641
            ..:.::.:..:|.|..||: |:|.....|.......|.|       :....|             
  Fly   518 RETPTSDDTNTSYSAGSTH-NSPISSFSISRLLFDAPPP-------AAGSAG------------- 561

  Fly   642 PLGVGGHQNTHHIQSNGHAQGHALVPAISPR-LNFNSGSFGAMYSNMHHTALSMSDS-------- 697
              |.|.|.:.||.:.:.||..||...|.:.. |:.............||..|..:::        
  Fly   562 --GKGHHHHHHHHKGHHHAHVHAQAQAHAHMLLHHQQQQQQQQQQQQHHHHLHAAENSLQQQQVA 624

  Fly   698 -YGAVTPIPSFNHSAVGPLAPPSPIP-------------------QQGDLTPSSLYPCHMTLRPP 742
             .|:.:...|.:.:..|...||:..|                   ||........:..|.     
  Fly   625 GTGSGSGSGSGSGTGAGSTGPPAHHPYNQQQHLHHLQQLQQQQQQQQQQAQQQQQHHHHQ----- 684

  Fly   743 PMAPAHHHIVPGDGGRPAGVGLGSGQSANLGASCSGSGYEVLSAYALPPPPMASSSAADSSFSAA 807
                 |||.|.......|..|......|...|           |.|:.....|.::||.::.:||
  Fly   685 -----HHHSVHHMHHHNAAAGYAEAAVAAAAA-----------AAAVAAAANARNAAAAAAVAAA 733

  Fly   808 S-SASANVTPHHTIAQE 823
            | ||||.||...:.|:|
  Fly   734 SASASAAVTIAESEAEE 750

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645
Homeobox 475..527 CDD:278475 32/51 (63%)
Vsx1NP_001284898.1 Homeobox 399..451 CDD:278475 32/51 (63%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450843
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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