DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and Vsx2

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster


Alignment Length:710 Identity:155/710 - (21%)
Similarity:240/710 - (33%) Gaps:229/710 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 STSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESGGASNSGEGSEQEAIY 302
            :|:||.:::.:.........:|....:..| |::|    .|||.|::| |..::..|..:|....
  Fly    28 TTTAGATVAKERQTPTPPKTTNATMATAAT-SAAT----AATPTNAAE-GNLTSVSEPQQQPQQQ 86

  Fly   303 EKLRLLNTQH-------------AAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVHGNHQALQQ 354
            ::.:..:..|             ||.......|.||......|:.|..      .||.:|    |
  Fly    87 QQEQQHHQPHHHQYREHHQMTMAAASRMAYFNAHAAVAAAFMPHQLAA------AVHHHH----Q 141

  Fly   355 HQQQSWP---PRHYSGS---------------WYPTSLSEIPISSAPNIASVTAYASGPS--LAH 399
            ||.|..|   |.|..|:               .:|    ..|:..|.....:.::|:|..  |..
  Fly   142 HQHQHHPHHHPHHPHGAVGGPPPPPPMQHHHPHHP----HHPLLHAQGFPQLKSFAAGAGTCLPG 202

  Fly   400 SLSPPN-DIESLASIGHQRNCPVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQA 463
            ||:|.: .:|||                             .|.|.|.||..             
  Fly   203 SLAPKDFGMESL-----------------------------NGFGVGPNSKK------------- 225

  Fly   464 RLILKRKLQRNRTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRR 528
               .|:|.:.:||.||:.|::.||:.|:..|||||:|||.|:.|..|||.||||||.|||||||:
  Fly   226 ---KKKKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRK 287

  Fly   529 EEKLRNQRRTPNSTGASATSSSTSATASLTDSPNSLSACSSLLSGSAGGPSVSTINGLSSPSTLS 593
            .||:                                          .||.::....||       
  Fly   288 TEKV------------------------------------------WGGSTIMAEYGL------- 303

  Fly   594 TNVNAPTLGAGIDSSESPTPIPHIRPSCTSDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNG 658
                   .||.:..|   .|:|........|||            :..|..:|..|...|.:|  
  Fly   304 -------YGAMVRHS---LPLPDTILKSAKDND------------AVAPWLLGMEQKCMHRKS-- 344

  Fly   659 HAQGHALVPAISPRLNFNSG------SFGAMYSNMH-------HTALSMSDSYGAVTPIPSFNHS 710
                   :.|.| .|..:||      |.|:..::..       |...|.::|...|:|.||...:
  Fly   345 -------IEAQS-ALKDDSGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPT 401

  Fly   711 AVGPLAPP-------------SPIPQQGDLTPSSLYPCHMTLRPPPMAPAHHHIVPGDGGRPAGV 762
            :....|||             :..|.....|.||..| |:.|..|......|..:.....:.|.:
  Fly   402 SASTSAPPTSTSGYAGAASSAATTPTGASTTNSSSSP-HIELGSPSPQQQQHLQLQQQQQQQASL 465

  Fly   763 GLGSGQSANLGASCSGSGYEVLSAYALPPPPMASSSAADSSFSAASSASANVTPHHTIAQESCPS 827
            .||:|.   :...|:...|..|               .|::.:|.:.|:|:....|.|...:..:
  Fly   466 YLGAGA---VVTGCAPPSYHPL---------------LDAANAAGAGAAASSKDFHMIMNTAVAA 512

  Fly   828 PCSSASHFGVAHSSGFSSDPISPAVSSYAHMSYNYASSANTMTPSSASGTSAHVAPGKQQ 887
            ..::|..   .|.........:.|.:...| ::|.|::.....|.:....|......|.|
  Fly   513 AAAAAQQ---QHQQQQQQQQQATATAPGLH-AHNLAAALMEHDPDAFRNNSIACLRAKAQ 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645
Homeobox 475..527 CDD:278475 32/51 (63%)
Vsx2NP_001284897.1 Homeobox 233..286 CDD:278475 32/52 (62%)
OAR 556..570 CDD:281777 3/13 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450842
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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