DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and pax6a

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_009296153.1 Gene:pax6a / 30567 ZFINID:ZDB-GENE-990415-200 Length:459 Species:Danio rerio


Alignment Length:595 Identity:254/595 - (42%)
Similarity:295/595 - (49%) Gaps:203/595 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 DECHSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQ--------------VSNGC 145
            :|.||||||||||||.||||||||||||||||||||||||||||||              |||||
Zfish    29 NEGHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNENVSNGC 93

  Fly   146 VSKILGRYYETGSIRPRAIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNI 210
            ||||||||||||||||||||||||||||.|||.||:|||||||||||||||||||.|.|||||||
Zfish    94 VSKILGRYYETGSIRPRAIGGSKPRVATPEVVGKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNI 158

  Fly   211 PSVSSINRVLRNLAAQKEQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLM 275
            ||||||||||||||::|:|.                                             
Zfish   159 PSVSSINRVLRNLASEKQQM--------------------------------------------- 178

  Fly   276 QTATPLNSSESGGASNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSS 340
                        ||         :.:|||||:||                   ||:    ||..:
Zfish   179 ------------GA---------DGMYEKLRMLN-------------------GQT----GTWGT 199

  Fly   341 HPQLVHGNHQALQQHQQQSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPN 405
            .|                         .|||.       :|.|                  ..||
Zfish   200 RP-------------------------GWYPG-------TSVP------------------GQPN 214

  Fly   406 DIESLASIGHQRNCPVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRK 470
                      |..|               .|||    |.|||:|..:||..::::.|.||.||||
Zfish   215 ----------QDGC---------------QQSD----GGGENTNSISSNGEDSDETQMRLQLKRK 250

  Fly   471 LQRNRTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQ 535
            |||||||||.:||::||||||||||||||||||||.||.||||||||||||||||||||||||||
Zfish   251 LQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQ 315

  Fly   536 RRTPNSTGASATSSSTSATASLTDSPNSLSACSSLLSGSAGGPSVSTINGLSS-----PSTLSTN 595
            ||..:::.:....||:.:|:.....|...:.. |..|||..|.|.:.:....|     ||....|
Zfish   316 RRQASNSSSHIPISSSFSTSVYQPIPQPTTPV-SFTSGSMLGRSDTALTNTYSALPPMPSFTMAN 379

  Fly   596 VNAPTLGAGIDSSESPTPIPHIRPSCTSDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHA 660
             |.|...:...|.....|        ||.:.|||..:      :..|..:..|.|:..:.::|..
Zfish   380 -NLPMQPSQTSSYSCMLP--------TSPSVNGRSYD------TYTPPHMQAHMNSQSMAASGTT 429

  Fly   661 QGHALVPAIS 670
            ....:.|.:|
Zfish   430 STGLISPGVS 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 116/136 (85%)
Homeobox 475..527 CDD:278475 45/51 (88%)
pax6aXP_009296153.1 PAX 31..169 CDD:128645 116/137 (85%)
Homeobox 255..307 CDD:306543 45/51 (88%)
Retinal 341..>459 CDD:330657 26/115 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 240 1.000 Domainoid score I2213
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1152885at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45636
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 1 1.500 - -
77.550

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