DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and pax6a

DIOPT Version :10

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_009296153.1 Gene:pax6a / 30567 ZFINID:ZDB-GENE-990415-200 Length:459 Species:Danio rerio


Alignment Length:595 Identity:254/595 - (42%)
Similarity:295/595 - (49%) Gaps:203/595 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 DECHSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQ--------------VSNGC 145
            :|.||||||||||||.||||||||||||||||||||||||||||||              |||||
Zfish    29 NEGHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNENVSNGC 93

  Fly   146 VSKILGRYYETGSIRPRAIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNI 210
            ||||||||||||||||||||||||||||.|||.||:|||||||||||||||||||.|.|||||||
Zfish    94 VSKILGRYYETGSIRPRAIGGSKPRVATPEVVGKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNI 158

  Fly   211 PSVSSINRVLRNLAAQKEQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLM 275
            ||||||||||||||::|:|.                                             
Zfish   159 PSVSSINRVLRNLASEKQQM--------------------------------------------- 178

  Fly   276 QTATPLNSSESGGASNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSS 340
                        ||         :.:|||||:||                   ||:    ||..:
Zfish   179 ------------GA---------DGMYEKLRMLN-------------------GQT----GTWGT 199

  Fly   341 HPQLVHGNHQALQQHQQQSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPN 405
            .|                         .|||.       :|.|                  ..||
Zfish   200 RP-------------------------GWYPG-------TSVP------------------GQPN 214

  Fly   406 DIESLASIGHQRNCPVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRK 470
                      |..|               .|||    |.|||:|..:||..::::.|.||.||||
Zfish   215 ----------QDGC---------------QQSD----GGGENTNSISSNGEDSDETQMRLQLKRK 250

  Fly   471 LQRNRTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQ 535
            |||||||||.:||::||||||||||||||||||||.||.||||||||||||||||||||||||||
Zfish   251 LQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQ 315

  Fly   536 RRTPNSTGASATSSSTSATASLTDSPNSLSACSSLLSGSAGGPSVSTINGLSS-----PSTLSTN 595
            ||..:::.:....||:.:|:.....|...:.. |..|||..|.|.:.:....|     ||....|
Zfish   316 RRQASNSSSHIPISSSFSTSVYQPIPQPTTPV-SFTSGSMLGRSDTALTNTYSALPPMPSFTMAN 379

  Fly   596 VNAPTLGAGIDSSESPTPIPHIRPSCTSDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHA 660
             |.|...:...|.....|        ||.:.|||..:      :..|..:..|.|:..:.::|..
Zfish   380 -NLPMQPSQTSSYSCMLP--------TSPSVNGRSYD------TYTPPHMQAHMNSQSMAASGTT 429

  Fly   661 QGHALVPAIS 670
            ....:.|.:|
Zfish   430 STGLISPGVS 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 116/136 (85%)
Homeodomain 473..528 CDD:459649 48/54 (89%)
pax6aXP_009296153.1 PAX 31..169 CDD:128645 116/137 (85%)
Homeodomain 253..308 CDD:459649 48/54 (89%)

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