DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and pax3a

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_571352.1 Gene:pax3a / 30532 ZFINID:ZDB-GENE-980526-52 Length:509 Species:Danio rerio


Alignment Length:751 Identity:211/751 - (28%)
Similarity:280/751 - (37%) Gaps:295/751 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 VNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRAIG 165
            ||||||||:.|||||:..|.||||:||.|.|||.|||.|:||:|||||||.||.|||||||.|||
Zfish    38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIG 102

  Fly   166 GSKPRVATA-EVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQKEQ 229
            ||||:.:|. :|..||.:||||.|.:|:|||||:||::.:|..:|:||||||:|:||        
Zfish   103 GSKPKQSTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDGICDRNNVPSVSSISRMLR-------- 159

  Fly   230 QSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESGGASNSGE 294
                                 ...|||                                    |:
Zfish   160 ---------------------CKFGGN------------------------------------GD 167

  Fly   295 GSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNH-----LGTRSSHPQLVHGNHQALQQ 354
            ..|.:...||..:...:..|                  .|     ||.||||             
Zfish   168 EDEDDDEVEKREIEENERRA------------------KHSIDGILGDRSSH------------- 201

  Fly   355 HQQQSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNC 419
                                                                             
Zfish   202 ----------------------------------------------------------------- 201

  Fly   420 PVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQID 484
                             |||                |:..|.:..|.||||.:|:||:||.:|::
Zfish   202 -----------------SDE----------------GSDVDSEPGLPLKRKQRRSRTTFTAEQLE 233

  Fly   485 SLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNST---GASA 546
            .||:.||||||||::.||.||.:..|.|||:|||||||||:||::.. .||....|..   |...
Zfish   234 ELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG-ANQLMAFNHLIPGGFPP 297

  Fly   547 TSSSTSATASLTDSPNSLSACSSLLSGSAGGPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESP 611
            ::.|:.....|.|||...|             |:|.::  ..|||:                ..|
Zfish   298 SAMSSLQPYQLADSPYPPS-------------SISQVS--EQPSTV----------------HRP 331

  Fly   612 TPIPHIRPSCTSDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHAQGHALVPAISPRLNFN 676
            .|:|.     ||.:.:|              ||.|          .|..:|.:.....|.|..|:
Zfish   332 QPLPP-----TSVHQSG--------------LGSG----------PGAQEGSSAYCLSSGRHGFS 367

  Fly   677 SGSFGAMYSNMHHTALSMSDSYGAVTPIPSFNHSAVGPLAPPSPI---PQQGDLTPSSLYP--CH 736
            ..|.|.:.:..|...::.|.|.|..:.:....:....|..|.|..   |..|.|.||:..|  ||
Zfish   368 GYSDGYVAAPGHANPVNPSISNGLPSQVMGLLNPGAVPHQPQSDFALSPLTGGLEPSTGMPASCH 432

  Fly   737 MTLRPPPMAPAHHHIVPGDGGRPAGVGLGSGQSANLGASCSGSGYEVLSAYALPPPPMASSSAAD 801
            .:.|        ...:||....||   |.|.|| ...:|.|..||.|             ...|.
Zfish   433 SSQR--------LEALPGLPSMPA---LPSSQS-YCPSSYSSPGYSV-------------DHVAS 472

  Fly   802 SSFSAASSASANVTPHHTIAQESCPSPCSSASHFGV 837
            ..:|....:..|.:...|:.:.|...|...|| ||:
Zfish   473 YQYSQYGQSKVNTSTVTTVERLSRVYPLKRAS-FGL 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 79/120 (66%)
Homeobox 475..527 CDD:278475 32/51 (63%)
pax3aNP_571352.1 PAX 34..159 CDD:128645 79/120 (66%)
Homeobox 223..276 CDD:278475 32/52 (62%)
Pax7 350..394 CDD:289156 10/43 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

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