DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ey and Pax2

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_006231505.2 Gene:Pax2 / 293992 RGDID:1305568 Length:432 Species:Rattus norvegicus


Alignment Length:602 Identity:179/602 - (29%)
Similarity:247/602 - (41%) Gaps:219/602 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 HSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPR 162
            |.||||||||||.||||||..||:||||||.|.|||||||.|:||:||||||||||||||||:|.
  Rat    17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPG 81

  Fly   163 AIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQK 227
            .||||||:|||.:||.||::|||:.|::||||||||||.|.:|.||.:||||||||::|.    |
  Rat    82 VIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRT----K 142

  Fly   228 EQQ-----STGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESG 287
            .||     ..|:|:..|:.|::|              |.|.:...:||:::     .|:.|....
  Rat   143 VQQPFHPTPDGAGTGVTAPGHTI--------------VPSTASPPVSSASN-----DPVGSYSIN 188

  Fly   288 G----ASNSGEGSEQE--AIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVH 346
            |    ..::||..::|  .:|     .:..|..|.|.|              ||           
  Rat   189 GILGIPRSNGEKRKREEVEVY-----TDPAHIRGGGGL--------------HL----------- 223

  Fly   347 GNHQALQQHQQQSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLA 411
                                 .|   :|.::...|.||                           
  Rat   224 ---------------------VW---TLRDVSEGSVPN--------------------------- 237

  Fly   412 SIGHQRNCPVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRT 476
                                             |::.:|..|             |::.|:.:  
  Rat   238 ---------------------------------GDSQSGVDS-------------LRKHLRAD-- 254

  Fly   477 SFTNDQIDSLEKEFERTHYPDVF-ARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPN 540
            :||..|:::|::.|||..||||| |.|.:..:.|                        |:...|.
  Rat   255 TFTQQQLEALDRVFERPSYPDVFQASEHIKSEQG------------------------NEYSLPA 295

  Fly   541 ST-GASATSSSTSATASLTDSPNSLSACSSLLSGSAGGPSV-------STINGLSS--PSTLSTN 595
            .| |.....||.||:.:        ....|.:||:...|.|       :|:.|...  |.|...:
  Rat   296 LTPGLDEVKSSLSASTN--------PELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGS 352

  Fly   596 VNAPTLGAGIDSSE-SPTPIPHIRPSCTSDNDNGRQSEDCRRV---------CSPCPLGVGGHQN 650
            ....||...:..|| |..|..|  |..|:.|:..|.|.....:         ..|.|:....::.
  Rat   353 YPTSTLAGMVPGSEFSGNPYSH--PQYTAYNEAWRFSNPALLMPPPGAPPLPLLPLPMTATSYRG 415

  Fly   651 THHIQSNGHAQGHALVP 667
             .||:....:.|..:||
  Rat   416 -DHIKLQADSFGLHIVP 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 92/122 (75%)
Homeobox 475..527 CDD:278475 15/52 (29%)
Pax2XP_006231505.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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