DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ey and Pax6

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_006234695.1 Gene:Pax6 / 25509 RGDID:3258 Length:436 Species:Rattus norvegicus


Alignment Length:596 Identity:253/596 - (42%)
Similarity:293/596 - (49%) Gaps:207/596 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 HSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQ--------------VSNGCVSK 148
            ||||||||||||.||||||||||||||||||||||||||||||              ||||||||
  Rat     5 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDSENVSNGCVSK 69

  Fly   149 ILGRYYETGSIRPRAIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSV 213
            |||||||||||||||||||||||||.||||||:|||||||||||||||||||.|.||||||||||
  Rat    70 ILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 134

  Fly   214 SSINRVLRNLAAQKEQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTA 278
            |||||||||||::|:|.                                                
  Rat   135 SSINRVLRNLASEKQQM------------------------------------------------ 151

  Fly   279 TPLNSSESGGASNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQ 343
                     ||         :.:|:|||:||.|..                              
  Rat   152 ---------GA---------DGMYDKLRMLNGQTG------------------------------ 168

  Fly   344 LVHGNHQALQQHQQQSWPPRHYSGSWYP-TSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDI 407
                           ||..|   ..||| ||:...|..                           
  Rat   169 ---------------SWGTR---PGWYPGTSVPGQPTQ--------------------------- 188

  Fly   408 ESLASIGHQRNCPVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQ 472
                                     ||.|..|   |:|||:|..:||..::::.|.||.||||||
  Rat   189 -------------------------DGCQQQE---GQGENTNSISSNGEDSDEAQMRLQLKRKLQ 225

  Fly   473 RNRTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRR 537
            |||||||.:||::||||||||||||||||||||.||.||||||||||||||||||||||||||||
  Rat   226 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRR 290

  Fly   538 TPNSTGASATSSSTSATASLTDSPNSLSACSSLLSGSAGGPSVSTINGLSS-----PSTLSTNVN 597
            ..::|.:....||:.:|:.....|...:..||..|||..|.:.:.:....|     ||....| |
  Rat   291 QASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMAN-N 354

  Fly   598 APTLGAGIDSSESPTPIPHIRPSC---TSDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGH 659
            .|        .:.|.|......||   ||.:.|||..:      :..|..:..|.|:..:.::|.
  Rat   355 LP--------MQPPVPSQTSSYSCMLPTSPSVNGRSYD------TYTPPHMQTHMNSQPMGTSGT 405

  Fly   660 AQGHALVPAIS 670
            .....:.|.:|
  Rat   406 TSTGLISPGVS 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 117/136 (86%)
Homeobox 475..527 CDD:278475 45/51 (88%)
Pax6XP_006234695.1 PAX 4..142 CDD:128645 117/136 (86%)
Homeobox 228..281 CDD:395001 46/52 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 241 1.000 Domainoid score I2169
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1152885at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45636
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.020

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