DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and Shox2

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_038693.1 Gene:Shox2 / 20429 MGIID:1201673 Length:331 Species:Mus musculus


Alignment Length:418 Identity:89/418 - (21%)
Similarity:134/418 - (32%) Gaps:218/418 - (52%)


- Green bases have known domain annotations that are detailed below.


  Fly   441 GSGEGENSNGGAS-----NIGNTE---------------------------DDQARLILKRKLQR 473
            |.|.|..:.||.|     ::|..|                           :|:.:..:|::  |
Mouse    80 GGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEVSPELKDRKDDAKGMEDEGQTKIKQR--R 142

  Fly   474 NRTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRT 538
            :||:||.:|::.||:.|:.|||||.|.||.|:.::||.|||:||||.|||||.|::|        
Mouse   143 SRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQE-------- 199

  Fly   539 PNSTGASATSSSTSATASLTDSPNSLSACSSLLSGSAGGPSVSTINGLSSPSTLSTNVNAPTLGA 603
                                   |.|.  ..:|.|:|.                           
Mouse   200 -----------------------NQLH--KGVLIGAAS--------------------------- 212

  Fly   604 GIDSSESPTPIPHIRPSCTSDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHAQGHALVPA 668
                                      |.|.||                                 
Mouse   213 --------------------------QFEACR--------------------------------- 218

  Fly   669 ISPRLNFNSGSFGAMYSNMHHTALSM---SDSYGAVTPIPSFNHSAVGPLAPPSPIPQQGDLTPS 730
            ::|.:|..              ||.|   .||:..|||: ||.              .|..|...
Mouse   219 VAPYVNVG--------------ALRMPFQQDSHCNVTPL-SFQ--------------VQAQLQLD 254

  Fly   731 SLYPCHMTLRPPPMAPAHHHIVPGDGGRPAGVGLGSGQSANLGASCSGSGYEVLSA--YALPPPP 793
            |           .:|.||||:.|                 :|.|.   :.|.:..|  :.||...
Mouse   255 S-----------AVAHAHHHLHP-----------------HLAAH---APYMMFPAPPFGLPLAT 288

  Fly   794 MASSSAADSSFSAASSASANVTPHHTIA 821
            :|:.||:.:|..||::|:...:.:.:||
Mouse   289 LAADSASAASVVAAAAAAKTTSKNSSIA 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645
Homeobox 475..527 CDD:278475 31/51 (61%)
Shox2NP_038693.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 26..140 9/59 (15%)
Homeobox 143..197 CDD:395001 31/53 (58%)
OAR 311..327 CDD:397759 2/6 (33%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 313..326 2/4 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.940

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