DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ey and Pax4

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_035168.1 Gene:Pax4 / 18506 MGIID:97488 Length:349 Species:Mus musculus


Alignment Length:492 Identity:152/492 - (30%)
Similarity:185/492 - (37%) Gaps:223/492 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 SGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRA 163
            |.||||||:||.|||||..|||:||:||..|.|||||||.|:||||||||||||||.||.:.|:.
Mouse     7 SSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSKILGRYYRTGVLEPKC 71

  Fly   164 IGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQKE 228
            |||||||:||..||::|:|.|.|.|::|||||:.:|..|.:||.|..|||||||||||       
Mouse    72 IGGSKPRLATPAVVARIAQLKDEYPALFAWEIQHQLCTEGLCTQDKAPSVSSINRVLR------- 129

  Fly   229 QQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESGGASNSG 293
                                                                             
Mouse   130 ----------------------------------------------------------------- 129

  Fly   294 EGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVHGNHQALQQHQQQ 358
                                                                     |||:.|..
Mouse   130 ---------------------------------------------------------ALQEDQSL 137

  Fly   359 SWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNCPVAT 423
            .|                            |...|...||..|..|:.           ||    
Mouse   138 HW----------------------------TQLRSPAVLAPVLPSPHS-----------NC---- 159

  Fly   424 EDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEK 488
                               |.....:.|.|:                  ||||.|:..|.::|||
Mouse   160 -------------------GAPRGPHPGTSH------------------RNRTIFSPGQAEALEK 187

  Fly   489 EFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTP----------NSTG 543
            ||:|..|||..||.:||....|||..::||||||||||||:|||:.:.:.|          ||.|
Mouse   188 EFQRGQYPDSVARGKLAAATSLPEDTVRVWFSNRRAKWRRQEKLKWEAQLPGASQDLTVPKNSPG 252

  Fly   544 ---ASATSSSTSATASLTDSPNSLSACSSLLSGSAGG 577
               |..:..|..:.|.....|.|.|.| .|..|:|.|
Mouse   253 IISAQQSPGSVPSAALPVLEPLSPSFC-QLCCGTAPG 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 82/121 (68%)
Homeobox 475..527 CDD:278475 29/51 (57%)
Pax4NP_035168.1 PAX 5..129 CDD:128645 82/121 (68%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 8..64 43/55 (78%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 83..131 28/176 (16%)
Homeobox 174..226 CDD:278475 29/51 (57%)
Transcription repression 278..349 5/12 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1152885at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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