DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ey and Pax3

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_001152992.1 Gene:Pax3 / 18505 MGIID:97487 Length:484 Species:Mus musculus


Alignment Length:772 Identity:218/772 - (28%)
Similarity:283/772 - (36%) Gaps:341/772 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 VNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRAIG 165
            ||||||||:.|||||:..|.||||:||.|.|||.|||.|:||:|||||||.||.|||||||.|||
Mouse    38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIG 102

  Fly   166 GSKPR-VATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQKEQ 229
            ||||: |.|.:|..||.:||||.|.:|:|||||:||::.||..:.:||||||:|:||        
Mouse   103 GSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILR-------- 159

  Fly   230 QSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESGGASNSGE 294
                                                                        |..|:
Mouse   160 ------------------------------------------------------------SKFGK 164

  Fly   295 GSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVHGNHQALQQHQQQS 359
            |.|:||..|:..                                                     
Mouse   165 GEEEEADLERKE----------------------------------------------------- 176

  Fly   360 WPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNCPVATE 424
                                          |..|.....||:                       
Mouse   177 ------------------------------AEESEKKAKHSI----------------------- 188

  Fly   425 DIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEKE 489
            |..|.:.....||||                |:..|.:..|.||||.:|:||:||.:|::.||:.
Mouse   189 DGILSERASAPQSDE----------------GSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERA 237

  Fly   490 FERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNSTGASATSSSTSAT 554
            ||||||||::.||.||.:..|.|||:|||||||||:||::            .||          
Mouse   238 FERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ------------AGA---------- 280

  Fly   555 ASLTDSPNSLSACSSLLSGSAGGPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIPHI-- 617
                   |.|.|.:.|:.|  |.|          |:.:.|   .||.... ::|..||.||..  
Mouse   281 -------NQLMAFNHLIPG--GFP----------PTAMPT---LPTYQLS-ETSYQPTSIPQAVS 322

  Fly   618 RPSCTSDNDNGRQSEDCRRVCSPCPLGVGG-HQNTHHIQSNGHAQGHALVPAISPRLNFNSGSFG 681
            .||.|              |..|.||.... ||:|  |.||..:.....:|  |.|..|:     
Mouse   323 DPSST--------------VHRPQPLPPSTVHQST--IPSNADSSSAYCLP--STRHGFS----- 364

  Fly   682 AMYSNMHHTALSMSDSYGAVTPIPSFNHSAVGPLAPPSPIPQQGDLTPSSLYPCHMTLRPPPMAP 746
                       |.:||:                 .|||        .||:           ||.|
Mouse   365 -----------SYTDSF-----------------VPPS--------GPSN-----------PMNP 382

  Fly   747 AHHHIVPGDGGRPAGVGLGSGQSANLGASCSGSGYEVLSAYALPP-----PPMASSSAADSSFSA 806
                 ..|:|..|..:||    ..|.|    |..::..:.|||.|     .|..:.||   |.|.
Mouse   383 -----TIGNGLSPQVMGL----LTNHG----GVPHQPQTDYALSPLTGGLEPTTTVSA---SCSQ 431

  Fly   807 ASSASANVTPHHTIAQESCPSPCSSASHFGVAHSSGFSSDPISP-AVSSYAHMSYNY 862
            ......||....| :|..||...|:|         |:|.||::. ....|...:::|
Mouse   432 RLEHMKNVDSLPT-SQPYCPPTYSTA---------GYSMDPVTGYQYGQYGQSAFHY 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 80/120 (67%)
Homeobox 475..527 CDD:278475 32/51 (63%)
Pax3NP_001152992.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:278709 80/120 (67%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93 39/54 (72%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161 27/115 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 26/184 (14%)
Homeobox 222..275 CDD:278475 32/52 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 18/57 (32%)
Pax7 347..391 CDD:289156 18/102 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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