DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and Pax1

DIOPT Version :10

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_006498974.1 Gene:Pax1 / 18503 MGIID:97485 Length:534 Species:Mus musculus


Alignment Length:398 Identity:148/398 - (37%)
Similarity:178/398 - (44%) Gaps:128/398 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 RNLP-CLGTAGGS-GLGGIAGKPSPTMEAVEASTASHPHSTSSYFATTYYHLTDDECHSGVNQLG 105
            |.|| ||...||: .|...|| |||....  |...:.|.:.             ::.:..|||||
Mouse   137 RALPLCLSGGGGARALPDCAG-PSPRRSG--ARQLAGPRAM-------------EQTYGEVNQLG 185

  Fly   106 GVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRAIGGSKPR 170
            ||||.|||||::.|.:|||||..|.|||||||.|:||:|||||||.||.|||||.|.||||||||
Mouse   186 GVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR 250

  Fly   171 VATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRN----LA------A 225
            |.|..||..|..||:..|.|||||||||||.:.||...|:||||||:|:|||    ||      |
Mouse   251 VTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGSLAQPGPYEA 315

  Fly   226 QKE-------------QQSTGSGSSST------------SAGNSISAKVSVSIGGNVSNV----- 260
            .|:             |....|..|.|            |||: :|...|.....:|||:     
Mouse   316 SKQPPPQPALPYNHIYQYPYPSPVSPTGTKMGTHPGVPGSAGH-VSIPRSWPSAHSVSNILGIRT 379

  Fly   261 -------ASGSRGTLSS----------------------------STDLMQTATPLNSSESGG-- 288
                   .:||.|...|                            ..|:..|.:..:.|..||  
Mouse   380 FMEQTGALAGSEGAAYSPKMEDWAGVNRAAFPTSPAVNGLEKPALEADIKYTQSASSLSAVGGFL 444

  Fly   289 ------ASNSGEGSEQEAIYEKLRLLNTQHAAG---PG-PLEPARAAPLVGQSPNHLGTRSSHPQ 343
                  |||      |..:|       :..|||   || |..||:|.||   :|:..|.      
Mouse   445 PACAYPASN------QHGVY-------SAPAAGYLSPGPPWPPAQAPPL---TPHGAGV------ 487

  Fly   344 LVHGNHQA 351
            .|||...|
Mouse   488 AVHGGELA 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 83/122 (68%)
Homeodomain 473..528 CDD:459649
Pax1XP_006498974.1 PAX 177..304 CDD:238076 86/126 (68%)
Blue background indicates that the domain is not in the aligned region.

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