DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and pax-3

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_496189.2 Gene:pax-3 / 185022 WormBaseID:WBGene00003939 Length:308 Species:Caenorhabditis elegans


Alignment Length:519 Identity:124/519 - (23%)
Similarity:166/519 - (31%) Gaps:234/519 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 TYYHLTDDECHSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGR 152
            |:.|:..   ...||||||||:.|||||...|..|:.:|..|.:||.|||.|:||:|.|||||.|
 Worm     7 TFNHILG---QGRVNQLGGVFINGRPLPIHVRHAIISMAKKGIKPCHISRQLKVSHGAVSKILNR 68

  Fly   153 YYETGSIRPRAIGGS-KPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSI 216
            |.|||||.|..|||| :.|:....|..:|.....|.|.:.|.|:||.|:.:::||..|.|:|.:|
 Worm    69 YAETGSISPGQIGGSPRARLTVQAVEKEILIACDENPQMSAAELRDWLIHKDICTKGNAPTVPAI 133

  Fly   217 NRVLRNLAAQKEQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPL 281
            .|::.|         .|.|.........:|..:...:|.::...:..|                 
 Worm   134 KRLIGN---------KGVGVPKKMERKRLSYSIDSILGISIDECSKSS----------------- 172

  Fly   282 NSSESGGASNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVH 346
                    |:..|||                                                  
 Worm   173 --------SDDEEGS-------------------------------------------------- 179

  Fly   347 GNHQALQQHQQQSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLA 411
                                                                   ||.||..|  
 Worm   180 -------------------------------------------------------SPSNDASS-- 187

  Fly   412 SIGHQRNCPVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRT 476
                                                                        :||||
 Worm   188 ------------------------------------------------------------RRNRT 192

  Fly   477 SFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNS 541
            |||.:|:|.||..|....||...|||.::.:.||.|.:|..|||||||:.|:...:..|... ..
 Worm   193 SFTAEQLDVLENAFRADTYPHANARESISKETGLSEEKIMTWFSNRRARCRKNMPMYQQYNV-QG 256

  Fly   542 TGASATSSSTSATASLTDSPNSLSACSSLLSGSAGGPSVST---INGL--------SSPSTLST 594
            .|:|..|..|     |..||....            ||.||   :|.|        |.||:.|:
 Worm   257 FGSSPPSYPT-----LLPSPMMFL------------PSYSTSPQLNPLFFQHILQSSPPSSQSS 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 60/123 (49%)
Homeobox 475..527 CDD:278475 26/51 (51%)
pax-3NP_496189.2 PAX 13..141 CDD:238076 61/139 (44%)
HOX 187..243 CDD:197696 29/117 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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