DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and lin-39

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_001021164.1 Gene:lin-39 / 176068 WormBaseID:WBGene00003024 Length:253 Species:Caenorhabditis elegans


Alignment Length:294 Identity:74/294 - (25%)
Similarity:112/294 - (38%) Gaps:88/294 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   267 TLSSSTDLMQTATPLNSSESGGASNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQS 331
            |..||||..:...|.:||.|..:|:|..              :|......|....:..:..:|..
 Worm     5 TSPSSTDAPRATAPESSSSSSSSSSSSS--------------STSSVGASGIPSSSELSSTIGYD 55

  Fly   332 PNHLGTRSSHPQLVHGNHQALQQHQQQSWPPRHYSGSWY-PTSLSEIPISSAPNIASVTAYASGP 395
            |.   |.|:          ||..|          .||:| |||.|:|          .:.:||..
 Worm    56 PM---TASA----------ALSAH----------FGSYYDPTSSSQI----------ASYFASSQ 87

  Fly   396 SLAHSLSPPNDIESLASIGHQRNC--PVATEDIHLKKELDGHQSDETG------SGEGEN---SN 449
            .|.....|        .:|.|..|  |..|...|..|.|:|...|:..      ||:.::   ::
 Worm    88 GLGGPQYP--------ILGDQSLCYNPSVTSTHHDWKHLEGDDDDDKDDDKKGISGDDDDMDKNS 144

  Fly   450 GGA---------SNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEKEFERTHYPDVFARERLA 505
            |||         |..|.:..:          :|.||::|.:|:..|||||....|.....|..:|
 Worm   145 GGAVYPWMTRVHSTTGGSRGE----------KRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVA 199

  Fly   506 GKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTP 539
            ..:.|.|.::::||.|||.|.::|.|  ::..||
 Worm   200 HSLMLTERQVKIWFQNRRMKHKKENK--DKPMTP 231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645
Homeobox 475..527 CDD:278475 20/51 (39%)
lin-39NP_001021164.1 Homeobox 169..221 CDD:278475 20/51 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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