DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and Pax3

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_446162.1 Gene:Pax3 / 114502 RGDID:620431 Length:484 Species:Rattus norvegicus


Alignment Length:772 Identity:218/772 - (28%)
Similarity:284/772 - (36%) Gaps:341/772 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 VNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRAIG 165
            ||||||||:.|||||:..|.||||:||.|.|||.|||.|:||:|||||||.||.|||||||.|||
  Rat    38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIG 102

  Fly   166 GSKPR-VATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQKEQ 229
            ||||: |.|.:|..||.:||||.|.:|:|||||:||::.||..:.:||||||:|:||        
  Rat   103 GSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILR-------- 159

  Fly   230 QSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESGGASNSGE 294
                                                                        |..|:
  Rat   160 ------------------------------------------------------------SKFGK 164

  Fly   295 GSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVHGNHQALQQHQQQS 359
            |.|:||..|:..                                                     
  Rat   165 GEEEEADLERKE----------------------------------------------------- 176

  Fly   360 WPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNCPVATE 424
                                          |..|.....||:                       
  Rat   177 ------------------------------AEESEKKAKHSI----------------------- 188

  Fly   425 DIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEKE 489
            |..|.:.....||||                |:..|.:..|.||||.:|:||:||.:|::.||:.
  Rat   189 DGILSERASAPQSDE----------------GSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERA 237

  Fly   490 FERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNSTGASATSSSTSAT 554
            ||||||||::.||.||.:..|.|||:|||||||||:||::            .||          
  Rat   238 FERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ------------AGA---------- 280

  Fly   555 ASLTDSPNSLSACSSLLSGSAGGPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIPHI-- 617
                   |.|.|.:.|:.|  |.|          |:.:.|   .||.... ::|..||.||..  
  Rat   281 -------NQLMAFNHLIPG--GFP----------PTAMPT---LPTYQLS-ETSYQPTSIPQAVS 322

  Fly   618 RPSCTSDNDNGRQSEDCRRVCSPCPLGVGG-HQNTHHIQSNGHAQGHALVPAISPRLNFNSGSFG 681
            .||.|              |..|.||.... ||:|  |.||..:.....:|  |.|..|:     
  Rat   323 DPSST--------------VHRPQPLPPSTVHQST--IPSNADSSSAYCLP--STRHGFS----- 364

  Fly   682 AMYSNMHHTALSMSDSYGAVTPIPSFNHSAVGPLAPPSPIPQQGDLTPSSLYPCHMTLRPPPMAP 746
                       |.:||:                 .|||        .||:           ||.|
  Rat   365 -----------SYTDSF-----------------VPPS--------GPSN-----------PMNP 382

  Fly   747 AHHHIVPGDGGRPAGVGLGSGQSANLGASCSGSGYEVLSAYALPP-----PPMASSSAADSSFSA 806
            |     .|:|..|..:||    ..|.|    |..::..:.|||.|     .|..:.||   |.|.
  Rat   383 A-----IGNGLSPQVMGL----LTNHG----GVPHQPQTDYALSPLTGGLEPTTTVSA---SCSQ 431

  Fly   807 ASSASANVTPHHTIAQESCPSPCSSASHFGVAHSSGFSSDPISP-AVSSYAHMSYNY 862
            ......||....| :|..||...|         ::|:|.||::. ....|...:::|
  Rat   432 RLEHMKNVDSLPT-SQPYCPPTYS---------TTGYSMDPVTGYQYGQYGQSAFHY 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 80/120 (67%)
Homeobox 475..527 CDD:278475 32/51 (63%)
Pax3NP_446162.1 PAX 34..159 CDD:128645 80/120 (67%)
MFAP1 164..>286 CDD:336570 61/272 (22%)
Homeobox 222..276 CDD:333795 33/53 (62%)
Pax7 347..391 CDD:289156 19/102 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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