DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and lhx6

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_002941184.1 Gene:lhx6 / 100493242 XenbaseID:XB-GENE-493341 Length:389 Species:Xenopus tropicalis


Alignment Length:118 Identity:38/118 - (32%)
Similarity:58/118 - (49%) Gaps:19/118 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   446 ENSNG----GASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEKEFERTHYPDVFARERLAG 506
            ||.||    ||  :.:.:|.|     .:..:|.|||||.:|:..::.:|.:.:.||....::||.
 Frog   223 ENGNGITLEGA--VPSEQDSQ-----PKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLAD 280

  Fly   507 KIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNSTGASATSSSTSATASLTD 559
            ..||....|||||.|.||        |:::.||.........:.|..|:||:|
 Frog   281 MTGLSRRVIQVWFQNCRA--------RHKKHTPQHGVPPQGPTPTRITSSLSD 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645
Homeobox 475..527 CDD:278475 21/51 (41%)
lhx6XP_002941184.1 LIM1_Lhx6 96..149 CDD:188766
LIM2_Lhx6 157..211 CDD:188768
Homeobox 249..302 CDD:365835 22/60 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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