DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and pax6l

DIOPT Version :10

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_002938577.1 Gene:pax6l / 100485335 XenbaseID:XB-GENE-29077751 Length:281 Species:Xenopus tropicalis


Alignment Length:245 Identity:106/245 - (43%)
Similarity:135/245 - (55%) Gaps:63/245 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   436 QSDET--------GSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEKEFER 492
            ||:.|        .|.:.|:..|.|::  :.::.|.||.|||||||||||||.:||::|||||||
 Frog    35 QSNTTIDSCQQLDSSLDSEHQPGAAND--DLDESQIRLQLKRKLQRNRTSFTQEQIEALEKEFER 97

  Fly   493 THYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNSTGA--SATSSSTSAT- 554
            |||||||||||||.||.||||||||||||||||||||||||||||..::|.:  |..||.:|:. 
 Frog    98 THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTSSHLSINSSFSSSVY 162

  Fly   555 -----------------ASLTDS------------PNSL---------SACSSLLSGSAGGPSVS 581
                             |::|:|            ||:|         |..|.::|.|   ||||
 Frog   163 QSIPQPSNSGSMLGRSEAAITNSYGSLPPLPSFTMPNNLPIQPIASQTSTYSCMISSS---PSVS 224

  Fly   582 TIN-GLSSPSTLSTNVNAPTLGAGIDSSES--------PTPIPHIRPSCT 622
            ..: ...:|..|.|:::...||:|..||..        |..:|...|..|
 Frog   225 VRSYDAYTPPQLQTHMSNQNLGSGASSSTGLISPGVSVPVQVPGGDPDLT 274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645
Homeodomain 473..528 CDD:459649 48/54 (89%)
pax6lXP_002938577.1 Homeodomain 78..133 CDD:459649 48/54 (89%)
Blue background indicates that the domain is not in the aligned region.

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