DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment myo and LEFTY2

DIOPT Version :9

Sequence 1:NP_726604.1 Gene:myo / 43811 FlyBaseID:FBgn0026199 Length:598 Species:Drosophila melanogaster
Sequence 2:NP_003231.2 Gene:LEFTY2 / 7044 HGNCID:3122 Length:366 Species:Homo sapiens


Alignment Length:385 Identity:80/385 - (20%)
Similarity:133/385 - (34%) Gaps:118/385 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   287 MQGDDANTVNEFLIDLNKNQAKKSDIPI-NTNDEEYESILSHISSIYIFPEEIQPHVRHNRKVDV 350
            :.|..|....|.|:.....|.:.|::|: :..|.|...|.:|:.:.|:    :.....|..:...
Human    15 LAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQYV----VLLRRSHGDRSRG 75

  Fly   351 FRFQIDSSYSDL------SYATLHLYLRGWDWISAHQPGLLEEIKKQPRKDIVVTIHRAIRVANT 409
            .||  ..|:.::      |.|:.||.:.|.            |.:..|..::|..:.|..:    
Human    76 KRF--SQSFREVAGRFLASEASTHLLVFGM------------EQRLPPNSELVQAVLRLFQ---- 122

  Fly   410 TSFNPKVKMFEFRHSIPSGLGQWVAVDLKSL-LGNLGSNMTQEI---LIKGAETWMKSLVVTTD- 469
               .|..|....||...|.......|.::.| :.:.|||.|..|   |:...|:..|:..||.. 
Human   123 ---EPVPKAALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDVTEAV 184

  Fly   470 ------NTSKNPLTVHIEIGSQKKH----------------------------------RRKRSV 494
                  :..:.||.:.:.:  |::|                                  .|....
Human   185 NFWQQLSRPRQPLLLQVSV--QREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTLDLRDYGA 247

  Fly   495 YMDC------TENDHDMRCCRYPLKVNFTSFGW--HFVVAPTSFDAYFCSGDCKVGYLEQYPHTH 551
            ..||      ||.   .||||..:.::.....|  ::|:.|..|.||.|.|.|      |.|...
Human   248 QGDCDPEAPMTEG---TRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTC------QQPPEA 303

  Fly   552 LAALTTSATP-CCSPTKMSSLSLLYFDDNHNLVLSV------------IPNMSVEGCSCS 598
            ||.......| .|..::.:||.         :::|:            :|||.|:.|||:
Human   304 LAFNWPFLGPRQCIASETASLP---------MIVSIKEGGRTRPQVVSLPNMRVQKCSCA 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
myoNP_726604.1 TGF_beta 506..597 CDD:278448 27/105 (26%)
LEFTY2NP_003231.2 TGFb_propeptide <106..214 CDD:307025 24/116 (21%)
TGF_beta 263..353 CDD:306518 26/104 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11848
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.