DRSC/TRiP Functional Genomics Resources

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Protein Alignment myo and gdf10a

DIOPT Version :9

Sequence 1:NP_726604.1 Gene:myo / 43811 FlyBaseID:FBgn0026199 Length:598 Species:Drosophila melanogaster
Sequence 2:XP_691459.3 Gene:gdf10a / 563003 ZFINID:ZDB-GENE-090312-17 Length:441 Species:Danio rerio


Alignment Length:511 Identity:111/511 - (21%)
Similarity:179/511 - (35%) Gaps:187/511 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 PLAKVSEHGDLSRVQSVSLYR--NTLINIESMLQRQLREKAKVDSI----ESIKMHILMRLNLKK 222
            |...:|:|       ...||.  ||..|       :|:|...|.|.    |:::..:..||||..
Zfish    40 PTDALSQH-------MYKLYEKYNTEPN-------RLKEGNTVRSFKAKPENVEQRVSYRLNLTS 90

  Fly   223 LPNITKPISVPQNIIDNFY------------RDYNASSKTTVWNRMESIDESHL-----SINDTY 270
            |......:|   :....|:            |..|.|.:.|.:..:.||   .|     |:|.|.
Zfish    91 LQGSEVILS---STFHFFFDKRPRQRSWFCKRFKNPSCRITNFPLLPSI---RLLFRSPSVNSTT 149

  Fly   271 GDHIMTDFFDESSSSQMQGDDANTV-------NEFLIDLN----------KNQAKKSDIP---IN 315
            |..:.............|..|.:.:       |:.||.|.          ::|...|.:|   :.
Zfish   150 GSLLGNLTVVPHRRGTWQSKDVSVIMKEARDRNQLLITLEFDYGEQYQRYQDQLSPSTLPYLLVY 214

  Fly   316 TND---EEYESILSHISSIYIFPEEIQ--------PHVRHNRKVDV-FRFQIDSSYSDLSYATLH 368
            .||   .|..|:...:.....|..:.|        |.:|..|:::: |...|::  ::|.....:
Zfish   215 ANDLAISEPNSVAVSLQRYDPFIGDQQPAQSPDSSPDIRVKRELELDFTDPIEN--NELPEVEYN 277

  Fly   369 LYLRGWDWISAHQPGLLEEIKKQPRKDIVVTIHRAIRVANTTSFNPKVKMFEFRHSIPSGLGQWV 433
            .:.:...|.||:.|...:..||:.|:                                       
Zfish   278 SFKQHDMWESAYYPLKPKPFKKERRR--------------------------------------- 303

  Fly   434 AVDLKSLLGNLGSNMTQEILIKGAETWMKSLVVTTDNTSKNPLTVHIEIGSQKKHRRK-----RS 493
                                 ||.|        .||...|:.: :..:..:.||.||:     ||
Zfish   304 ---------------------KGQE--------HTDGFGKSQV-LRFDEKTMKKARRRQWKEPRS 338

  Fly   494 VYMDCTENDHDMRCCRYPLKVNFTSFGWH-FVVAPTSFDAYFCSGDCKVGYLEQYPHTHLAALTT 557
                         |.|..|||:|...||: ::::|.||||::|:|.|      ::|...:...:.
Zfish   339 -------------CSRRYLKVDFADIGWNEWILSPKSFDAFYCAGTC------EFPIPKVVRPSN 384

  Fly   558 SAT----------------PCCSPTKMSSLSLLYFDDNHNLVLSVIPNMSVEGCSC 597
            .||                |||.|.||..||:|:.|::.|:||.:.||||||.|:|
Zfish   385 HATIQSIVKAVGIIPGIPEPCCVPEKMKPLSVLFVDESKNIVLKIYPNMSVETCAC 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
myoNP_726604.1 TGF_beta 506..597 CDD:278448 39/107 (36%)
gdf10aXP_691459.3 TGF_beta 337..440 CDD:278448 41/121 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11848
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

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