DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment myo and GDF6

DIOPT Version :9

Sequence 1:NP_726604.1 Gene:myo / 43811 FlyBaseID:FBgn0026199 Length:598 Species:Drosophila melanogaster
Sequence 2:NP_001001557.1 Gene:GDF6 / 392255 HGNCID:4221 Length:455 Species:Homo sapiens


Alignment Length:437 Identity:100/437 - (22%)
Similarity:152/437 - (34%) Gaps:140/437 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 PISVPQNIIDNFYRDYNASSKTTVWNRMESIDESHLSINDTYGDHIMTDFFDESSSSQMQGDDAN 293
            |..||...:.:.||.|:.:.|              |.||        ..||..|.|       ||
Human    90 PRVVPHEYMLSIYRTYSIAEK--------------LGIN--------ASFFQSSKS-------AN 125

  Fly   294 TVNEF----LIDLNKNQAKKSDIPINTNDEEYESILSHISSIYIFPEEIQPHVRHNRKVDVFRFQ 354
            |:..|    |.||:....::         ::|...:|.:|.    .||:.     ..::.:|| |
Human   126 TITSFVDRGLDDLSHTPLRR---------QKYLFDVSMLSD----KEELV-----GAELRLFR-Q 171

  Fly   355 IDSSYSDLSYATLHLYL---------------------RGWDWISAHQPGLLEEIKKQPRKDIVV 398
            ..|:........||:.|                     .||:.....| ||    :.||.|.:.:
Human   172 APSAPWGPPAGPLHVQLFPCLSPLLLDARTLDPQGAPPAGWEVFDVWQ-GL----RHQPWKQLCL 231

  Fly   399 TIHRAIRVANTTSFNPKVKMFEFRHSIPSGLGQWVAVDLKSLLGNLGSNMTQEILIKGAETWMKS 463
            .:..|....:......:.:          |..|....||:||.........||..:         
Human   232 ELRAAWGELDAGEAEARAR----------GPQQPPPPDLRSLGFGRRVRPPQERAL--------- 277

  Fly   464 LVVTTDNTSKNPLT-VHIEIGSQKK----------------------------HRRKRSVYMDCT 499
            |||.|.:..||... :..::||.:.                            .||:|:.:....
Human   278 LVVFTRSQRKNLFAEMREQLGSAEAAGPGAGAEGSWPPPSGAPDARPWLPSPGRRRRRTAFASRH 342

  Fly   500 ENDHD----MRCCRYPLKVNFTSFGW-HFVVAPTSFDAYFCSGDCKV---GYLEQYPHTHLAALT 556
            ...|.    :||.:.||.|||...|| .:::||..::||.|.|.|..   .:||...|..:..|.
Human   343 GKRHGKKSRLRCSKKPLHVNFKELGWDDWIIAPLEYEAYHCEGVCDFPLRSHLEPTNHAIIQTLM 407

  Fly   557 TSATP------CCSPTKMSSLSLLYFDDNHNLVLSVIPNMSVEGCSC 597
            .|..|      ||.|||::.:|:||.|..:|:|.....:|.||.|.|
Human   408 NSMDPGSTPPSCCVPTKLTPISILYIDAGNNVVYKQYEDMVVESCGC 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
myoNP_726604.1 TGF_beta 506..597 CDD:278448 37/100 (37%)
GDF6NP_001001557.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 29..93 1/2 (50%)
TGFb_propeptide 79..281 CDD:395559 52/262 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 244..267 6/32 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 300..351 4/50 (8%)
TGF_beta_GDF5_6_7 354..455 CDD:381644 37/101 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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