DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment myo and tgfb3

DIOPT Version :10

Sequence 1:NP_726604.1 Gene:myo / 43811 FlyBaseID:FBgn0026199 Length:598 Species:Drosophila melanogaster
Sequence 2:NP_919367.2 Gene:tgfb3 / 369195 ZFINID:ZDB-GENE-030723-4 Length:410 Species:Danio rerio


Alignment Length:498 Identity:93/498 - (18%)
Similarity:165/498 - (33%) Gaps:176/498 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 SRVQSVSLYRNTLINIESMLQRQLREKAKVDSIESIKMHILMRLNLKKLPNITKPISVPQNIIDN 239
            |...|:||...|.::|:::.:::         :|:|:..||.:|.|...|....|..||..::  
Zfish    15 SVTMSLSLSTCTTVDIDNIKKKR---------VEAIRGQILSKLRLTSPPQTLGPSQVPYQVL-- 68

  Fly   240 FYRDYNASSKTTVWNRMESIDESHLSINDTYGDHIMTDFFDESSSSQMQGDDANTVNEFLIDLNK 304
                              ::..|...:.|.:|          ....|..|.|             
Zfish    69 ------------------ALYNSTRDLLDGFG----------KDRHQSCGQD------------- 92

  Fly   305 NQAKKSDIPINTNDEEYESILSHISSIYIFPEEIQ-PHVRHNRKVDVFRFQIDSSYSDLSYATLH 368
                      ||..|.|...:...:.|...||... |:........||||.:             
Zfish    93 ----------NTETEYYAKEIHKFNMIQGSPENNDLPYCPKGITSKVFRFDV------------- 134

  Fly   369 LYLRGWDWISAHQPGLLEEIKKQPRKDIVVTIHRAIRVAN--TTSFNPKVKMFEF---------- 421
                              .|.::...::.....||:|:.|  |:....::::::.          
Zfish   135 ------------------SIMEKNASNLFRAEFRALRMPNLSTSRTEQRIELYQILRPDEHIGKQ 181

  Fly   422 -----RHSIPSGLGQWVAVD----LKSLLGNLGSNMTQEILI------------------KGAET 459
                 ::.:..|..:||:.|    ::..|.|..:|:..||.:                  :..|.
Zfish   182 RYIGRKNVMIGGTDEWVSFDVTETVREWLTNRATNLGLEISVHCPCHTFRPNGEIIENVNEALEV 246

  Fly   460 WMKSLVVTTDNTSKNPLTVHIEIGSQKK-------------------------HRRKRSVYMDCT 499
            ..:.:.|..|.      .:..::|..||                         .||||::.....
Zfish   247 KFRGMDVEDDG------PIRSDMGRLKKPKEQNLPHLILMMLPPHRLDVLPTSRRRKRALDTKYC 305

  Fly   500 ENDHDMRCCRYPLKVNF-TSFGWHFVVAPTSFDAYFCSGDCKVGYLEQYPHTHLAALT------- 556
            .::::..||...|.::| ...||.::..|..:.|.||||.|.  ||.....||.:.|:       
Zfish   306 FSNYEENCCVRKLYIDFRQDLGWRWIHEPKGYHANFCSGPCP--YLRSADTTHSSLLSLYNTLNP 368

  Fly   557 -TSATPCCSPTKMSSLSLLYFDDNHNLVLSVIPNMSVEGCSCS 598
             .||:|||.|..:..|::||:......| ..:.||.|:.|.||
Zfish   369 EASASPCCVPQDLEPLTILYYVGRTPKV-EQLSNMIVKSCKCS 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
myoNP_726604.1 TGF_beta_GDF8_like 506..597 CDD:381629 32/99 (32%)
tgfb3NP_919367.2 TGFb_propeptide 22..231 CDD:480997 46/301 (15%)
TGF_beta_TGFB3 310..410 CDD:381656 32/102 (31%)

Return to query results.
Submit another query.