DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment myo and lft2

DIOPT Version :10

Sequence 1:NP_726604.1 Gene:myo / 43811 FlyBaseID:FBgn0026199 Length:598 Species:Drosophila melanogaster
Sequence 2:NP_571036.1 Gene:lft2 / 30146 ZFINID:ZDB-GENE-990630-11 Length:362 Species:Danio rerio


Alignment Length:361 Identity:79/361 - (21%)
Similarity:126/361 - (34%) Gaps:122/361 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   314 INTNDEEYESILSHISSIYIFPEEIQPHVRHNRKVDVFRFQIDSSYSDLSYATLHLYLRGWDWIS 378
            |...|.|...:.:||.|.|:...::. |.|..|                |..:|...|||     
Zfish    41 IQKRDLENLVVPAHIKSKYLSMLKLH-HQRRRR----------------SLPSLAGILRG----- 83

  Fly   379 AH-QPGLLEEIK--KQPRKDIVVTIHRAIRVANTTSFNPKVKMF----------EFRHSIPSGLG 430
            .| ...:..|||  ...|:.:|..:...:: .||.....::|:|          |.||..|....
Zfish    84 IHGNADITGEIKYSDTTRQRLVFDMEARLQ-ENTEVTMAELKLFQTAAQSPSKPERRHHRPINHA 147

  Fly   431 Q----WVAVDLKSLLGNLGSNMTQEI---LIKGAETWMKSLVVT------TDNTSKNPLTVHIEI 482
            :    ||.|     |.| |||.|..:   |:...|:..:|..||      :.:..|.||  |:|:
Zfish   148 RVSIYWVEV-----LEN-GSNRTSLLDSRLVPIHESGWRSFDVTQAIHYWSKSQKKAPL--HLEV 204

  Fly   483 -------GSQKKHRRKRSVYM--------------------------------DCTENDHDMRCC 508
                   ||......||..:.                                :|..:.:..:||
Zfish   205 WTEGERPGSYAAEMAKRVRFATQDPKENTLEKDMGAPELVLYTLDLDEYGSQGNCNSSPNSSKCC 269

  Fly   509 RYPLKVNFTSFGW--HFVVAPTSFDAYFCSGDCK------VGYLEQYPHTHLAALTTSATPCCSP 565
            |....:||....|  ::::.|..:.|:.|:|.||      .||.::               .|:.
Zfish   270 REEHFINFRELTWTQYWIIEPAGYQAFRCAGGCKQPKRGFYGYGQR---------------TCAV 319

  Fly   566 TKMSSLSLLYF---DDNHNLVLSVIPNMSVEGCSCS 598
            .:.:.|.::|.   .|...:.::..|||.||.|.||
Zfish   320 MESAPLPMMYLVKKGDYTEIEVAEFPNMIVEKCGCS 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
myoNP_726604.1 TGF_beta_GDF8_like 506..597 CDD:381629 24/101 (24%)
lft2NP_571036.1 TGFb_propeptide 23..>191 CDD:480997 43/178 (24%)
TGF_beta_LEFTY1_2 267..354 CDD:381636 24/101 (24%)

Return to query results.
Submit another query.