DRSC/TRiP Functional Genomics Resources

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Protein Alignment myo and GDF1

DIOPT Version :10

Sequence 1:NP_726604.1 Gene:myo / 43811 FlyBaseID:FBgn0026199 Length:598 Species:Drosophila melanogaster
Sequence 2:NP_001483.3 Gene:GDF1 / 2657 HGNCID:4214 Length:372 Species:Homo sapiens


Alignment Length:215 Identity:58/215 - (26%)
Similarity:84/215 - (39%) Gaps:61/215 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   430 GQWVAVD-----LKSLLGNLGSNMTQEILIKGA-----ETWMKS--------------------- 463
            ||....|     |:.|:..||..:..|:|  ||     .:|.:|                     
Human   171 GQGAGADPGPVLLRQLVPALGPPVRAELL--GAAWARNASWPRSLRLALALRPRAPAACARLAEA 233

  Fly   464 --LVVTTDNTSKNPLTVHIEIGSQKKHRRKRSVYMDCTENDHDMRCCRYPLKVNFTSFGWH-FVV 525
              |:||.|....:||.         :.||.....:.   ......|....|.|:|...||| :|:
Human   234 SLLLVTLDPRLCHPLA---------RPRRDAEPVLG---GGPGGACRARRLYVSFREVGWHRWVI 286

  Fly   526 APTSFDAYFCSGDCKV-------GYLEQYPHTHLAALTTSAT------PCCSPTKMSSLSLLYFD 577
            ||..|.|.:|.|.|.:       |......|..|.||..:|.      |||.|.::|.:|:|:||
Human   287 APRGFLANYCQGQCALPVALSGSGGPPALNHAVLRALMHAAAPGAADLPCCVPARLSPISVLFFD 351

  Fly   578 DNHNLVLSVIPNMSVEGCSC 597
            ::.|:||....:|.|:.|.|
Human   352 NSDNVVLRQYEDMVVDECGC 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
myoNP_726604.1 TGF_beta_GDF8_like 506..597 CDD:381629 36/104 (35%)
GDF1NP_001483.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 67..86
TGF_beta_GDF1_3_like 267..372 CDD:381642 37/105 (35%)
Blue background indicates that the domain is not in the aligned region.

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