DRSC/TRiP Functional Genomics Resources

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Protein Alignment myo and Gdf5

DIOPT Version :10

Sequence 1:NP_726604.1 Gene:myo / 43811 FlyBaseID:FBgn0026199 Length:598 Species:Drosophila melanogaster
Sequence 2:NP_001385590.1 Gene:Gdf5 / 252835 RGDID:620102 Length:495 Species:Rattus norvegicus


Alignment Length:380 Identity:90/380 - (23%)
Similarity:147/380 - (38%) Gaps:93/380 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   261 ESHLSINDTYGDHIMTDFFDESSSSQMQGDDANTVNEFLIDLNKNQAKKSDIPINTNDEEYESIL 325
            |..||:..|..|   .|....:||.:::...|||:..|   ::|.|..:..:   ...:.|...:
  Rat   165 EYMLSLYRTLSD---ADRKGGNSSVKLEAGLANTITSF---IDKGQDDRGPV---VRKQRYVFDI 220

  Fly   326 SHISSIYIFPEEIQPHVRHNRKVDVFRFQIDSS--YSDLSYATLHLYLRGWDWISAHQPGLLEEI 388
            |.:....:...|::  :...:.:||.:..:.||  .:.|..::..         |..||..|.::
  Rat   221 SALEKDGLLGAELR--ILRKKPLDVAKPAVPSSGRVAQLKLSSCP---------SGRQPAALLDV 274

  Fly   389 KKQPRKD----IVVTIHRAIRVANTTSFNPKVKMFEFRHS--IPSGLGQWV---AVDLKSLLGNL 444
            :..|..|    .|..|.:..|              .|::|  :...|..|.   ||||:.|....
  Rat   275 RSVPGLDGSGWEVFDIWKLFR--------------NFKNSAQLCLELEAWERGRAVDLRGLGFER 325

  Fly   445 GSNMTQEILIKGAETWMKSLVVTTDNTSKNPL--------------TVHIEIGSQKKHRR----- 490
            .:....|          |:|.:....|.|..|              ||:..:.||::.||     
  Rat   326 AARQVHE----------KALFLVFGRTKKRDLFFNEIKARSGQDDKTVYEYLFSQRRKRRAPLAN 380

  Fly   491 ---KRSVYMDCTENDHDMRCCRYPLKVNFTSFGW-HFVVAPTSFDAYFCSGDCKV---GYLEQYP 548
               ||      ...:...||.|..|.|||...|| .:::||..::|:.|.|.|:.   .:||...
  Rat   381 RQGKR------PSKNLKARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTN 439

  Fly   549 HTHLAALTTSATP------CCSPTKMSSLSLLYFDDNHNLVLSVIPNMSVEGCSC 597
            |..:..|..|..|      ||.||::|.:|:|:.|..:|:|.....:|.||.|.|
  Rat   440 HAVIQTLMNSMDPESTPPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCGC 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
myoNP_726604.1 TGF_beta_GDF8_like 506..597 CDD:381629 35/100 (35%)
Gdf5NP_001385590.1 Treacle 34..>146 CDD:460967
TGFb_propeptide 139..>290 CDD:480997 29/144 (20%)
TGF_beta_GDF5 393..495 CDD:381669 36/102 (35%)
Blue background indicates that the domain is not in the aligned region.

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