DRSC/TRiP Functional Genomics Resources

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Protein Alignment myo and Tgfb1

DIOPT Version :9

Sequence 1:NP_726604.1 Gene:myo / 43811 FlyBaseID:FBgn0026199 Length:598 Species:Drosophila melanogaster
Sequence 2:NP_035707.1 Gene:Tgfb1 / 21803 MGIID:98725 Length:390 Species:Mus musculus


Alignment Length:449 Identity:89/449 - (19%)
Similarity:149/449 - (33%) Gaps:147/449 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 EKAKVDSIESIKMHILMRLNLKKLPN--ITKPISVPQNIID--NFYRDYNASSKTTVWNRMESID 260
            |..|...||:|:..||.:|.|...|:  ...|..:|:.::.  |..||..|.         ||.|
Mouse    39 ELVKRKRIEAIRGQILSKLRLASPPSQGEVPPGPLPEAVLALYNSTRDRVAG---------ESAD 94

  Fly   261 ESHLSINDTYGDHIMTDFFDESSSSQMQGDDANTVNEFLIDLNKNQAKKSDIPINTNDEEYESI- 324
            .......|.|                     |..|...|:             ::.|:..||.. 
Mouse    95 PEPEPEADYY---------------------AKEVTRVLM-------------VDRNNAIYEKTK 125

  Fly   325 -LSHISSIYIFPEEIQPHVRHNRKVDVFRFQIDSSYSDLSYATLHLYLRGWDWISAHQPGLLE-- 386
             :||  |||:|                      .:.||:..|             ..:|.||.  
Mouse   126 DISH--SIYMF----------------------FNTSDIREA-------------VPEPPLLSRA 153

  Fly   387 EIKKQPRKDIVVTIHRAIRVANTTSFNPKVKMFEFRHSIPSGLGQWVAVDLKSLLG---NLGSNM 448
            |::.|..|.   ::.:.:.:....| |...:....|...|:...:|::.|:..::.   |.|.  
Mouse   154 ELRLQRLKS---SVEQHVELYQKYS-NNSWRYLGNRLLTPTDTPEWLSFDVTGVVRQWLNQGD-- 212

  Fly   449 TQEILIKGAETWMKSLVVTTDNTSKNPLTVHIEIG------------------------------ 483
                   |.:.:..|...:.|:....   :|:||.                              
Mouse   213 -------GIQGFRFSAHCSCDSKDNK---LHVEINGISPKRRGDLGTIHDMNRPFLLLMATPLER 267

  Fly   484 SQKKH--RRKRSVYMDCTENDHDMRCCRYPLKVNF-TSFGWHFVVAPTSFDAYFCSGDCKVGYLE 545
            :|..|  |.:|::..:...:..:..||...|.::| ...||.::..|..:.|.||.|.|...:..
Mouse   268 AQHLHSSRHRRALDTNYCFSSTEKNCCVRQLYIDFRKDLGWKWIHEPKGYHANFCLGPCPYIWSL 332

  Fly   546 QYPHTHLAAL------TTSATPCCSPTKMSSLSLLYFDDNHNLVLSVIPNMSVEGCSCS 598
            ...::.:.||      ..||:|||.|..:..|.::|:......| ..:.||.|..|.||
Mouse   333 DTQYSKVLALYNQHNPGASASPCCVPQALEPLPIVYYVGRKPKV-EQLSNMIVRSCKCS 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
myoNP_726604.1 TGF_beta 506..597 CDD:278448 27/97 (28%)
Tgfb1NP_035707.1 TGFb_propeptide 30..261 CDD:366248 56/317 (18%)
Straightjacket domain. /evidence=ECO:0000250|UniProtKB:P07200 30..74 11/34 (32%)
Arm domain. /evidence=ECO:0000250|UniProtKB:P07200 75..271 45/291 (15%)
Bowtie tail. /evidence=ECO:0000250|UniProtKB:P01137 226..252 4/28 (14%)
Cell attachment site. /evidence=ECO:0000255 244..246 0/1 (0%)
TGF_beta_TGFB1 292..390 CDD:381654 27/98 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11848
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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