DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11360 and Mex3b

DIOPT Version :9

Sequence 1:NP_001259068.1 Gene:CG11360 / 43810 FlyBaseID:FBgn0039920 Length:628 Species:Drosophila melanogaster
Sequence 2:NP_001178555.1 Gene:Mex3b / 308790 RGDID:1306790 Length:576 Species:Rattus norvegicus


Alignment Length:629 Identity:244/629 - (38%)
Similarity:320/629 - (50%) Gaps:137/629 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 DDPRTLQLAL-ELSLVGFNDNQNCYAQPAQPLPMPLSARSDFEIGTINSTLPIPSAPNCLLLPNA 108
            ||.|.||||| :|||:|.:.::                                         .|
  Rat    36 DDQRALQLALDQLSLLGLDSDE-----------------------------------------GA 59

  Fly   109 GAVSSEDRSKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGR 173
            ....||.| |||.||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat    60 SLYDSEPR-KKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGR 123

  Fly   174 KEDVNKAKREILSAADHFSLIRASRKPVSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQVTIQV 238
            ||||..|:|||:|||:|||:|||||     ::|..:        .||||   |||.:|||.||||
  Rat   124 KEDVAMARREIISAAEHFSMIRASR-----NKNTAL--------NGAVP---GPPNLPGQTTIQV 172

  Fly   239 RVPYRVVGLVVGPKGATIKHIQQETQTYIVTPSREKEPIFEVTGLPDNVDTARKQIEAHIALRTG 303
            |||||||||||||||||||.|||:|.||||||||:|||:|||||:|:|||.||::||||||||||
  Rat   173 RVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEIEAHIALRTG 237

  Fly   304 SGSGSGDAITMQSSDSVDTKEYASLPSLTQILNDDLNSEILSSIYKNSVPST---------QEYA 359
            .        .::.:|..|.  :|:...:...|:.........|::....||.         ..|.
  Rat   238 G--------IIELTDENDF--HANGTDVGFDLHHGSGGSGPGSLWSKPTPSITPTPGRKPFSSYR 292

  Fly   360 NNSMKTVVNVSNSVKLVQGHHTGNCFQKSEFAEME-MTANITAADILDKRLPGNEVSVPLAKANV 423
            |:|..::.:.|.. ....|..:|:....|..|:.. .:..::.|...:....||..:....:|:|
  Rat   293 NDSSSSLGSASTD-SYFGGGTSGSTAATSRLADYSPPSPALSFAHNGNNNNNGNGYTYTAGEASV 356

  Fly   424 ANIVFRTTSSKTL--SFCPPTSTS---ASFH---SNCNANILTRSCSSASSTTSTKST----NNS 476
            .:....|....|.  :..||..|.   |.|.   ...:|..::.||||::|::::.|:    ...
  Rat   357 PSPDGGTELQPTFDPAPAPPPGTPLLWAQFERSPGGGSAAPVSSSCSSSASSSASSSSVVFPGGG 421

  Fly   477 ANTPPEILNIWKSISDSIDVDEGIGDSPSIWNQPANIIPTAHCSPTISISPTDSLLGMGEHSANQ 541
            |::.|...|:...:.                   ..:.|...| |.:| .|.....|.|||...:
  Rat   422 ASSTPSNANLGLLVH-------------------RRLHPGTSC-PRLS-PPLHMATGAGEHHLAR 465

  Fly   542 Q--------NLNHAK-----EPIMPNLPQK-IKGIQVQSNADNFLT----------HRECFVCNE 582
            :        .|.:|.     ...:|.||.. ..|....|::.:..:          .|:|.||.|
  Rat   466 RVRSDPGGGGLAYAAYANGLGTQLPGLPSSDTSGSSSSSSSSSSSSSSSSGLRRKGSRDCSVCFE 530

  Fly   583 NTVTTALVPCGHNMFCMECANHICLSMDAVCPVCNSIVYHAMRI 626
            :.|..||||||||:|||||||.||...:..||||::.|..|:||
  Rat   531 SEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRI 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11360NP_001259068.1 KH-I 124..185 CDD:238053 57/60 (95%)
KH 233..298 CDD:197652 53/64 (83%)
zf-C3HC4_3 575..620 CDD:290631 27/44 (61%)
Mex3bNP_001178555.1 KH-I 73..145 CDD:412160 65/71 (92%)
KH-I 165..236 CDD:412160 59/70 (84%)
RING-HC_MEX3B 523..565 CDD:319635 26/41 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 109 1.000 Domainoid score I6209
eggNOG 1 0.900 - - E1_KOG2113
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 347 1.000 Inparanoid score I2236
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D351875at33208
OrthoFinder 1 1.000 - - FOG0001319
OrthoInspector 1 1.000 - - otm45636
orthoMCL 1 0.900 - - OOG6_106586
Panther 1 1.100 - - O PTHR23285
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X819
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.830

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