DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11360 and mex3c

DIOPT Version :9

Sequence 1:NP_001259068.1 Gene:CG11360 / 43810 FlyBaseID:FBgn0039920 Length:628 Species:Drosophila melanogaster
Sequence 2:XP_002667516.2 Gene:mex3c / 100330946 -ID:- Length:533 Species:Danio rerio


Alignment Length:638 Identity:215/638 - (33%)
Similarity:282/638 - (44%) Gaps:199/638 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 STLPLSDDPRTLQLALELSLVG------------------FNDNQNCYAQPAQPLPMPLSARSDF 85
            |.|.|.|| .||..:..|.::|                  .|:|.|           .:..|.|.
Zfish    26 SGLHLRDD-ETLSESSHLGVLGAVLELQPLSQSGSDEENSINNNSN-----------TIIFRHDS 78

  Fly    86 EIGTINST----LPIPSAPNCLLLPNAG-----------------AVSSEDR-----SKKSQNMT 124
            ::..:.:.    :..| .||.|.....|                 .:..|:|     .:||.|.|
Zfish    79 DLEQLRARALAGMEAP-GPNGLFQDGLGESQGSEGYQGRMMMAMMMMQEEERCALNTRRKSVNTT 142

  Fly   125 ECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVNKAKREILSAAD 189
            |||.||:||||||||||||||||||||||||||||||||||||||||||||||..|||||||||:
Zfish   143 ECVMVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVVMAKREILSAAE 207

  Fly   190 HFSLIRASRKPVSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQVTIQVRVPYRVVGLVVGPKGA 254
            |||||||:|...:.:..:..|                 ||.|||.|||||||||:||||||||||
Zfish   208 HFSLIRATRNKAAPNVGHNSV-----------------PCHPGQTTIQVRVPYRMVGLVVGPKGA 255

  Fly   255 TIKHIQQETQTYIVTPSREKEPIFEVTGLPDNVDTARKQIEAHIALRTGSGSGSGDAITMQSSDS 319
            |||.|||:|.||||||||:|||:|||||:|:|||.||::||||||:||   :||.:.       :
Zfish   256 TIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEIEAHIAMRT---AGSVET-------N 310

  Fly   320 VDTKEYASLPSLTQILNDDLNSEILSS---IYKNSVPSTQEYANNSMKTVVNVSNSVKLVQGHHT 381
            ||..::       .....|:..|..||   ::...:   .::||.|.                  
Zfish   311 VDDDDF-------HYNGTDVGFESGSSGAWLFSGGI---SKFANGSF------------------ 347

  Fly   382 GNCFQKSEFAEMEMTANITAADILDKRLPGNEVSVPLAKANVANIVFRTTSSKTLSFCPPTSTSA 446
                                                  .:|.|.  :|..||.:|.    :::|.
Zfish   348 --------------------------------------NSNAAG--YRNDSSSSLG----SNSSE 368

  Fly   447 SFHSNCNANILTRSCSSASSTTSTKSTNNSANTPPEILNIWKSISDSIDVDEGIGDSPSIWNQP- 510
            |:.|...:.:...|..|...|.....|.....:           .||:..|..:..:||...|| 
Zfish   369 SYFSGKGSGVADLSPGSTGGTFWFGDTQLPLGS-----------EDSLGYDGLMMTAPSTNAQPA 422

  Fly   511 ---------ANIIPTAHCSPTISISPT--DSLLGMGEH------SANQQNLNHAKEPIMPNLPQK 558
                     |::..|...||: .:||:  ::|    :|      ..|.|:|........|:....
Zfish   423 LWSTFERGGASLPTTPRLSPS-RLSPSFPEAL----DHPLVRLVQENSQSLPAFGPAFSPSSADS 482

  Fly   559 IKGIQVQSNADNFLTHRE---CFVCNENTVTTALVPCGHNMFCMECANHICLS 608
             .|.....:..|:..|.:   |..|.|.  ..|||..|.|..|:||:|.|..|
Zfish   483 -TGSSSPPDVHNYTKHSQIPACVRCGEK--VPALVLGGQNRICLECSNSILQS 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11360NP_001259068.1 KH-I 124..185 CDD:238053 56/60 (93%)
KH 233..298 CDD:197652 52/64 (81%)
zf-C3HC4_3 575..620 CDD:290631 14/37 (38%)
mex3cXP_002667516.2 KH-I 142..203 CDD:238053 56/60 (93%)
KH 234..299 CDD:197652 52/64 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D351875at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5311
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.040

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