DRSC/TRiP Functional Genomics Resources

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Protein Alignment gw and Tnrc6a

DIOPT Version :9

Sequence 1:NP_726596.1 Gene:gw / 43808 FlyBaseID:FBgn0051992 Length:1384 Species:Drosophila melanogaster
Sequence 2:XP_011240059.1 Gene:Tnrc6a / 233833 MGIID:2385292 Length:1954 Species:Mus musculus


Alignment Length:1456 Identity:393/1456 - (26%)
Similarity:569/1456 - (39%) Gaps:403/1456 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LFSQDGWGCQHVNQDTNWEVPSSPEPANKDAPGPPMWKPS----INNG--TDLWESNLRNGGQPA 63
            :.|..|||...:.|:|.|:..:||....|...|...|..|    .|:|  ||....|..:....:
Mouse   711 VLSNSGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGSSATQTFNSGACTDKTSPNSNDTSSVS 775

  Fly    64 AQQVPKPS--WGHTPSSNLGGTWGEDDDGADSSSVWTGGAVSNAGSGAAVGVNQAGVNVGPGGVV 126
            ....|||:  ||.:..||..|.| |||..|      ||...||                      
Mouse   776 GWGDPKPTLRWGDSKGSNCQGGW-EDDSAA------TGMIKSN---------------------- 811

  Fly   127 SSGGPQWG----------------QGVVGVGLGSTGGNGSSNITGSSGVATGSSGNSSNAGNGWG 175
                 |||                ||         .|:|..:..|.| ::.|.:...|:..|.||
Mouse   812 -----QWGGCKEDKSTWNDSQKSKQG---------WGDGQKSSQGWS-ISAGDNWGESSRSNHWG 861

  Fly   176 DPREIRPLGVGGSMDIRNVEHRGGNGSGATSSDPRDIRMIDPRDPIRGDPRGISGRLNGTSEMWG 240
            :..  :....|||...|::.  |.|..|.|||.... ..|:|.:....|.   |.:.| :|:.||
Mouse   862 EAN--KKSSSGGSDSDRSIS--GWNELGKTSSFTWG-NNINPNNSSGWDE---SSKPN-SSQGWG 917

  Fly   241 HHPQMSHNQLQGINKMVGQSVATASTSVGTS-----------GS-GIGPG---GPGPSTVSGNIP 290
            ..|:.:            ||:....:|...|           || ||.|.   .||...:.|.||
Mouse   918 DPPKCN------------QSLGWGDSSKPVSSPDWNKQQDIVGSWGIPPATSKPPGTGWLGGPIP 970

  Fly   291 TQWGPAQPVSVGVSGPKDMSKQISGWEEPSPPPQRRSIPNYDDGTSLWGQQTR------------ 343
               .||:            .::.:|||||||...||.: ..|||||.||..::            
Mouse   971 ---APAK------------EEEPTGWEEPSPESIRRKM-EIDDGTSAWGDPSKYNYKNVNMWNKN 1019

  Fly   344 VPAASGHWKDMTDSIGRSSHLMRGQSQTGGIGIAGVGNSNVPVG-------ANPSNPISSVVGPQ 401
            :|.|||.    :|...:...|:...|        .|.:.....|       |.||.|.::|    
Mouse  1020 IPEASGR----SDQQAQMHRLLPAAS--------AVSSKETSSGSGWGEPWAEPSTPATTV---- 1068

  Fly   402 ARIPSVGGVQHKPDGGAMW---VHSGNVGGRNNVAA--VTTWGDDTHSVNVGAPSSGSVSSNNWV 461
                        .:|.:.|   :.||...|....||  .:|||    |.:|| |.|.|       
Mouse  1069 ------------DNGTSAWGKPIDSGPSWGEPITAASNASTWG----SSSVG-PQSLS------- 1109

  Fly   462 DDKSNSTLAQNSW-SDPAPVGVSWGNKQSKPPSNSASSGWSTAAGVVDGVDLGSEWNTHG----- 520
              ||.....|:.| .|..|:            ..|..:||...    :.|::|. ||::.     
Mouse  1110 --KSGPKSMQDGWCGDDMPL------------PGSRPTGWEEE----EDVEIGM-WNSNSSQELN 1155

  Fly   521 ---------------GIIGKSQQQQKLAGLNVGMVNVINAEIIKQSKQYRILVENGFKKEDVERA 570
                           |:.||.:::::  |:..|.....:|.|....||:..:   .|.::..|..
Mouse  1156 SSLNWPPYTKKMSSKGLSGKKRRRER--GMMKGGNKQEDAWINPFVKQFSNI---SFSRDSPEEN 1215

  Fly   571 LVIANMNIEEAADMLRANSSLSMDGWRRHDESLGSYADHNSSTSSGGFAGRYPVNSGQPSMSFPH 635
            :....|::  :..||: :..:.:|   :|..::|   |:|.:...|  .|..|..|.:.||.  .
Mouse  1216 VQSNKMDL--SGGMLQ-DKRMEID---KHSLNIG---DYNRTVGKG--PGSRPQISKESSME--R 1267

  Fly   636 NNLMNNMGGTAVTGGNNNTNMTALQVQKYLNQGQHGVAVGPQAVGNSSAVSVGFG-QNTSNAAVA 699
            |...:..|..|    :.:.||..:..|. :.......|:..||:|:.:    |.| ||.::....
Mouse  1268 NPYFDKDGIVA----DESQNMQFMSSQS-MKLPPSNSALPNQALGSIA----GLGTQNLNSVRQN 1323

  Fly   700 GAASVNIAANTNNQPSGQQ-------------IR------MLGQQIQLAI-----HSGFISSQIL 740
            |..::....||..||.|.|             :|      :|..|:.:::     ::|.::.  |
Mouse  1324 GNPNMFGVGNTAAQPRGMQQPPAQPLSSSQPNLRAQVPPPLLSPQVPVSLLKYAPNNGGLNP--L 1386

  Fly   741 TQPLTQTTLNLLNQL--LSNIKHLQ--AAQQSLTRGGNVNPMAVNVAISKYKQQIQNLQNQ-INA 800
            ..|.....||.|:||  ||.|..||  .|||...:.....|.|        .:|.|:.|.: ::.
Mouse  1387 FGPQQVAMLNQLSQLNQLSQISQLQRLLAQQQRAQSQRSAPSA--------NRQQQDQQGRPLSV 1443

  Fly   801 QQAVYVKQQNMQPT---SQQQQPQQQQL--PSVH------LSNSGNDYLRGHDAINNLQSNF--- 851
            ||.:..:.:.:.|:   .||..|.||.|  |::.      :.::..:..:|...:|.. |||   
Mouse  1444 QQQMMQQSRQLDPSLLVKQQTPPSQQPLHQPAMKSFLDNVMPHTTPELQKGPSPVNAF-SNFPIG 1507

  Fly   852 --SELNINKPSGYQGASNQQSRLNQWKLPVLDKEINSDSTEFSRAPGATKQNLTANTSNINSLGL 914
              |.||:|  .........||||.:| ..|....:|:...:.|...||.........|.......
Mouse  1508 LNSNLNVN--MDMNSIKEPQSRLRKW-TTVDSMSVNTSLDQNSSKHGAISSGFRLEESPFVPYDF 1569

  Fly   915 QNDST--WSTGRSIGDGWPDPSSDNENKDWSVAQPTSAATAYTDLVQEFEPGKPWKGSQIKSIED 977
            .|.||  .|...|||||||...|.|.:.  ||..|           .||.||:||||......|.
Mouse  1570 MNSSTSPASPPGSIGDGWPRAKSPNGSS--SVNWP-----------PEFRPGEPWKGYPNIDPET 1621

  Fly   978 DPSITPGSVARSPLSINSTPKDADIF--ANTGKNSP--TDLPPLSLSSSTWSF--NPNQNYPSHS 1036
            ||.:|||||..| |||| |.::.|..  .|:|.:|.  |.||    |:|.||.  ..|.|.|..|
Mouse  1622 DPYVTPGSVINS-LSIN-TVREVDHLRDRNSGSSSSLNTTLP----STSAWSSIRASNYNVPLSS 1680

  Fly  1037 ---------------WSDNSQQCTATS-ELWTSPL---NKSSSRGPPPGLTANSNKSANSNASTP 1082
                           ||..|...|:.: |||..||   |.::...||||||......:..: ::|
Mouse  1681 TAQSTSARNSDSKLTWSPGSVTNTSLAHELWKVPLPPKNITAPSRPPPGLTGQKPPLSTWD-NSP 1744

  Fly  1083 TTITGGANGWLQPRSGGVQTTNTNWTGGNTTWGSS-------WLLLKNLTAQIDGPTLRTLCMQH 1140
            ..:.|   ||        ..::..:|.| ::||.|       ||:|||||.||||.|||||||||
Mouse  1745 LRVGG---GW--------GNSDARYTPG-SSWGESSSGRITNWLVLKNLTPQIDGSTLRTLCMQH 1797

  Fly  1141 GPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENEVQSIM-QHLPQTPS 1204
            |||::||..|..|.||.:|:::||..|||.:|:.|||.||||.||..||.|:.... |....|||
Mouse  1798 GPLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPS 1862

  Fly  1205 -STSSSGTSGGNVGGVG-----TSANNANSGSAACLSGNNSGNGNGSA----------------- 1246
             ...|.|:|...:|.:.     :|..:.|..:.|.|||.|.|:.:|::                 
Mouse  1863 PGWQSLGSSQSRLGSLDCSHSFSSRTDVNHWNGAGLSGANCGDLHGTSLWGTPHYSTSLWGPPSS 1927

  Fly  1247 --SGAGSGNNGNSSCNNSAAGGGSSS 1270
              .|..|.:..|:..:....|||..|
Mouse  1928 DPRGISSPSPINAFLSVDHLGGGGES 1953

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gwNP_726596.1 Ago_hook 388..520 CDD:287408 34/137 (25%)
UBA_GAWKY 551..585 CDD:270470 5/33 (15%)
M_domain 613..848 CDD:289690 63/275 (23%)
TNRC6-PABC_bdg 844..1068 CDD:293214 86/255 (34%)
RRM_GW182_like 1116..1185 CDD:240881 44/75 (59%)
Tnrc6aXP_011240059.1 Ago_hook 1069..1194 CDD:371044 34/157 (22%)
M_domain 1289..1474 CDD:372400 49/199 (25%)
TNRC6-PABC_bdg 1497..1760 CDD:374665 92/297 (31%)
RRM_TNRC6A 1773..1855 CDD:241155 48/81 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 286 1.000 Inparanoid score I2823
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001648
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13020
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R11465
SonicParanoid 1 1.000 - - X744
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
77.140

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