DRSC/TRiP Functional Genomics Resources

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Protein Alignment gw and Tnrc6c

DIOPT Version :9

Sequence 1:NP_726596.1 Gene:gw / 43808 FlyBaseID:FBgn0051992 Length:1384 Species:Drosophila melanogaster
Sequence 2:XP_030101765.1 Gene:Tnrc6c / 217351 MGIID:2443265 Length:1936 Species:Mus musculus


Alignment Length:1416 Identity:392/1416 - (27%)
Similarity:546/1416 - (38%) Gaps:396/1416 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LFSQDGWGCQHVNQDTNWEVPSSPEPANKDAPGPPMW-----KPSINNG-TDLWESNLRN----- 58
            :.|..|||...|.|:|.||...||....|:..|...|     :||.:.| ||....|..|     
Mouse   689 VLSNSGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWGSIATQPSNSGGKTDGSIMNSTNTSSVS 753

  Fly    59 ---GGQPAAQQVP-KPSWGHT----PSSNLGGTWGEDDDGADSSSVWTGGAVSNAGSGAAVGVNQ 115
               ...|||  || ..|||.:    ||.  .|.||:    :.||:.....|.:.:|...:..|||
Mouse   754 GWVSSPPAA--VPANTSWGDSNNKAPSG--PGVWGD----SISSTAVNNAAATKSGHAWSGTVNQ 810

  Fly   116 AGVNVGPGGVVSSGGPQWGQGVVGVGLGSTGGN---GSSNITGSSG----VATGSSGNSSNAGNG 173
            ...:...|.........||.|.......|||..   .||::.|..|    ..:|...:.:.:|:|
Mouse   811 EDKSPTWGEPQKPKSQNWGDGQRANPAWSTGAGDWADSSSVLGHLGDGKKNGSGWDADGNRSGSG 875

  Fly   174 WGDPREIRPLGVGGSMDIRNVEHRGGNGSGATSSDPRDIRMIDPRDPIRGDPRGISGRLNGTSEM 238
            |.|...   .|..|          .|:|:.|         .::|     |...|.|.: .|..:.
Mouse   876 WNDATR---CGTSG----------WGSGTNA---------KVNP-----GTNWGESLK-PGPQQN 912

  Fly   239 WGHHPQMSHNQLQGINKMVGQSVATASTSVGTSGSGIGPGGPGPSTVSGNIPTQWGPAQPVSVGV 303
            |.|.||.::....|           .:.||..:|:|         .:.|.:|.:           
Mouse   913 WAHKPQDNNVSNWG-----------GAASVKQTGTG---------WIGGPLPVK----------- 946

  Fly   304 SGPKDMSKQISGWEEPSPPPQRRSIPNYDDGTSLWGQQTRVPAASGHWKDMTDSIGRSSHLMRGQ 368
              .|| |.:.:||||||||..||.: ..|||||.||..:.....:.:..|..:.:.:||      
Mouse   947 --QKD-SSEATGWEEPSPPSIRRKM-EIDDGTSAWGDPSTYNNKTVNMWDRNNPVIQSS------ 1001

  Fly   369 SQTGGIGIAGVGNSNVPVGANPSNPISSVVGPQARIP--SVGGVQ--HKPDGGAMWVHSGNVGGR 429
                         :..|  |.|:.|.||....:|..|  ...|.|  ..|..|.  |.||     
Mouse  1002 -------------TTAP--ATPTTPTSSSTTHRAETPPSHQAGTQLNRSPLLGP--VSSG----- 1044

  Fly   430 NNVAAVTTWGDDTHSVNVGAPSSGSVSSNNWVDDKSNSTLAQN---SWSDPAPVGVSWGNKQS-- 489
                    ||:        .||..|.:.|:|.:..|..||..|   :|..|...|..|.:...  
Mouse  1045 --------WGE--------MPSVHSKAENSWGEPSSPCTLVDNGTAAWGKPPSSGSGWDHPAEPV 1093

  Fly   490 ----------------KPPSNSASSGWSTAAGVVDGVDLG-SEWNTHGGIIGKSQQQQKLA---- 533
                            ||.|.|...||.:.|   |.::|| |:|....|.:..:...|:.:    
Mouse  1094 VPFGRASAPAAAPALCKPASKSMQEGWGSGA---DEMNLGTSQWEDEDGDMWNNAASQESSSSCS 1155

  Fly   534 --------GLNVGMVNV-------INAEIIKQSKQYRILVENGFKKEDVERALVIANMNIEEAAD 583
                    ||..||...       |.:.:|||      |.:.||.:|..|.||...:||:::|..
Mouse  1156 SWGNTSKKGLQKGMKTPGKQDEAWIMSRLIKQ------LTDMGFPREPAEEALKSNSMNLDQAMS 1214

  Fly   584 MLRANSSLSMDGWRRHDESLGSYADHNS-------------------------------STSSGG 617
            .| ....:.||     ...|| ..|:|.                               |...||
Mouse  1215 AL-LEKKVDMD-----KRGLG-MTDYNGMVTKPLGCRPPISKESSMDRPTFLDKLTLSFSNQDGG 1272

  Fly   618 FAGRYPVNS---GQPSMSFPHNNL---MNNMGGTAVTGGNNNTNMTALQVQKYLNQGQHGVAVGP 676
            .. ..|..|   ..||:..|.:|.   ...:||.|...|..|.|.:     :.:..|..||    
Mouse  1273 LV-EEPTTSPFLPSPSLKLPLSNSALPSQALGGVASGLGMQNLNSS-----RQIPSGNLGV---- 1327

  Fly   677 QAVGNSSAVSVGFGQNTSNAAVAGAASVNIAANTNNQPSGQQI-----------------RMLGQ 724
              .|||                 |||.    |.|..||..|.:                 ::..|
Mouse  1328 --FGNS-----------------GAAQ----ARTMQQPPVQPLNSSQPSLRAQVPQFLSPQVQAQ 1369

  Fly   725 QIQLAIHSGFISSQILTQPLT---QTTLNLLNQLLSNIKHLQAAQQSLTRGGNVN-PM-----AV 780
            .:|.|..:..:|..:||.|:.   .|.||.|.||....:.||..||.|....||: ||     .|
Mouse  1370 LLQFAAKNIGLSPALLTSPINPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQQV 1434

  Fly   781 NVAISKYKQQIQNLQNQINAQQAVYVKQQ---------NMQPTSQQQ-------QPQQQQLPSVH 829
            ...|:..:||||..|.|:  .||:.|||.         ::.|::.:.       .||...||.:.
Mouse  1435 ARTITNLQQQIQQHQRQL--AQALLVKQPPPPPPPPHLSLHPSAGKSGMESFPPPPQAPGLPDLQ 1497

  Fly   830 L---SNSGNDYLRGHDAINNLQSNFSELNINKPSGYQGASNQQSRLNQWKLPVLDKEINSDSTEF 891
            .   .:|.|.:.....|..|...|.:.::::.....:..|..||||.||..|.....::|.::..
Mouse  1498 TKEQQSSPNTFAPYPLAGLNPNMNVNSIDMSSGLSVKDPSQSQSRLPQWTHPNSMGNLSSAASPL 1562

  Fly   892 SRAP---GATKQNLTANTSNINSLG--------LQN-DSTWSTGRSIGDGWPDPSSDNE--NKDW 942
            .:.|   ||....|:......:|:.        :|| :|..|...::...|....||::  :...
Mouse  1563 DQNPSKHGAIPGGLSIGPPGKSSIDDSYGRYDLIQNSESPASPPVAVPHSWSRAKSDSDKISNGS 1627

  Fly   943 SVAQPTSAATAYTDLVQEFEPGKPWKGSQIKSIEDDPSITPGSVARSPLSINSTPKDAD--IFAN 1005
            |::.|           .||.||.||||.|....|:||.:|||||...| :||:|.:|.:  :..:
Mouse  1628 SISWP-----------PEFHPGVPWKGLQNIDPENDPDVTPGSVPTGP-TINTTIQDVNRYLLKS 1680

  Fly  1006 TGKNSPTDLPPLSLSSSTWSFNPNQNYPSHSWSDNSQQCTATSELWTSPLNKSSSRGPPPGLTAN 1070
            .||        ||...||||..|    .||:      |.:.:.|||..|.|.::...|||||   
Mouse  1681 GGK--------LSDIKSTWSSGP----ASHT------QASLSHELWKVPRNTTAPTRPPPGL--- 1724

  Fly  1071 SNKSANSNASTPTTITGGAN--GWLQPRSGGVQTTNTNW---TGGNTTWGSSWLLLKNLTAQIDG 1130
                ||...|:    |.|.:  ||....|.|     :.|   |.|.|   ||||:|:|||.||||
Mouse  1725 ----ANPKPSS----TWGTSPLGWTSSYSSG-----SAWSTDTSGRT---SSWLVLRNLTPQIDG 1773

  Fly  1131 PTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENEVQSI 1195
            .||||||:|||||::||..|.||.|:.:|:::|||.|||.:|:.|||.||||.||...|.||...
Mouse  1774 STLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRF 1838

  Fly  1196 M---QHLPQTPSSTSSSGTSGGNVGGVGTSANNANSGSA----ACLSGNNS 1239
            :   |.||.|.|..||||.|...:|..|::.....|.:|    .||||..|
Mouse  1839 LAQGQALPPTSSWQSSSGGSQPRLGTSGSTHGLVRSDTAHWNTPCLSGKGS 1889

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gwNP_726596.1 Ago_hook 388..520 CDD:287408 41/157 (26%)
UBA_GAWKY 551..585 CDD:270470 10/33 (30%)
M_domain 613..848 CDD:289690 72/285 (25%)
TNRC6-PABC_bdg 844..1068 CDD:293214 68/239 (28%)
RRM_GW182_like 1116..1185 CDD:240881 44/68 (65%)
Tnrc6cXP_030101765.1 Ago_hook 1070..1185 CDD:371044 24/117 (21%)
UBA_TNR6C 1182..1219 CDD:270469 14/43 (33%)
M_domain 1270..1460 CDD:372400 61/224 (27%)
TNRC6-PABC_bdg 1504..1758 CDD:374665 84/299 (28%)
RRM_TNRC6C 1759..1841 CDD:241157 49/81 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_28PT5
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 286 1.000 Inparanoid score I2823
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001648
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR13020
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R11465
SonicParanoid 1 1.000 - - X744
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.950

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