DRSC/TRiP Functional Genomics Resources

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Protein Alignment gw and tnrc6b

DIOPT Version :9

Sequence 1:NP_726596.1 Gene:gw / 43808 FlyBaseID:FBgn0051992 Length:1384 Species:Drosophila melanogaster
Sequence 2:XP_031756940.1 Gene:tnrc6b / 100498152 XenbaseID:XB-GENE-951772 Length:1925 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gwNP_726596.1 Ago_hook 388..520 CDD:287408
UBA_GAWKY 551..585 CDD:270470
M_domain 613..848 CDD:289690
TNRC6-PABC_bdg 844..1068 CDD:293214
RRM_GW182_like 1116..1185 CDD:240881
tnrc6bXP_031756940.1 PHA03307 201..>558 CDD:223039
Ago_hook 1040..1150 CDD:371044
TNRC6-PABC_bdg 1469..1742 CDD:406905
RRM_TNRC6B 1744..1826 CDD:410111
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 255 1.000 Inparanoid score I3085
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001648
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13020
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X744
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.150

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