DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ekar and GLR2.1

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_198062.2 Gene:GLR2.1 / 832768 AraportID:AT5G27100 Length:901 Species:Arabidopsis thaliana


Alignment Length:968 Identity:199/968 - (20%)
Similarity:365/968 - (37%) Gaps:213/968 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 IGAIFSNQPGM-YNSELAFRYAIHRLNMDKSLLPETTVDYYVEYVNRFDSFETVQKVC--KLIRV 86
            ||..:||...: .|..|:..|:.|         |||........|:..:...|.....  .:...
plant    40 IGTAYSNMTLLCINMSLSDFYSSH---------PETQTRLVTTVVDSKNDVVTAAAAALDLITNK 95

  Fly    87 GVQAVFSPTDSVLATHINSICDALDIPNIG-----------RSAHDFSINVYPSKQLVNYAFNDV 140
            .|:|:..|..|:.|..:..:.....:|.:.           ||.:.|......|.|:  :|..::
plant    96 EVKAILGPWTSMQAQFMIEMGQKSQVPIVTYSATSPSLASIRSQYFFRATYDDSSQV--HAIKEI 158

  Fly   141 IQYLNWTRFGILHEKENGIINLHQLSRSFHGEVHMRQVSRDSYVSALNEFKGKEIHNIIIDTNS- 204
            |:...|.....::..:.            .||..|.:::     ..|.|...:..:..:|..|: 
plant   159 IKLFGWREVAPVYVDDT------------FGEGIMPRLT-----DVLQEINVRIPYRTVISPNAT 206

  Fly   205 -NGISILLKNILQQQMNEYKYH---YLFTSFDLETYDLEDFKYNFVNITSFRLVDTADV------ 259
             :.||:.|..::......:..|   .|.:.|..:..::...|..:|.|.:..:.|...:      
plant   207 DDEISVELLRMMTLPTRVFVVHLVELLASRFFAKATEIGLMKQGYVWILTNTITDVLSIMNETEI 271

  Fly   260 -------GVKQIL---KDIGLYSHHIFKK-PYLNLHIKKSTILESEPALMFDSVYVFAIGLQTLE 313
                   |||..:   |::..:.....|: |..:|::        .....:|:....|:.::...
plant   272 ETMQGVLGVKTYVPRSKELENFRSRWTKRFPISDLNV--------YGLWAYDATTALALAIEEAG 328

  Fly   314 QSHSLTLLNISCEEENSWDGGLSLINY-------LNAVEWKGLTGPIQFKDGQRVQFKLDLIKLK 371
            .| :||.:.:..:...|...||.:..|       |:.|.::||.|..||.:|:......:::.:.
plant   329 TS-NLTFVKMDAKRNVSELQGLGVSQYGPKLLQTLSRVRFQGLAGDFQFINGELQPSVFEIVNVN 392

  Fly   372 QHSIVKVGEWTPHGHL--NITE-PSMFFDAGSMNVTLVVI------TILETPYVMMHYGKN---- 423
            ......:|.|.....|  |:.: |:......|....|..|      |.:...:.:...||.    
plant   393 GQGGRTIGFWMKEYGLFKNVDQKPASKTTFSSWQDRLRPIIWPGDTTSVPKGWEIPTNGKRLQIG 457

  Fly   424 -----------------FTGNERFYGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEWNG 471
                             .|.:..|.||.:|..|.:.:.:.:|...|.:|.        :.|.::.
plant   458 VPVNNTFQQFVKATRDPITNSTIFSGFSIDYFEAVIQAIPYDISYDFIPF--------QDGGYDA 514

  Fly   472 MVAQLMKYKADLAVGSMTITYARESVIDFTKPFMNLGISILFKVPTSEPTRLFS--FMNPLAIEI 534
            :|.|:...|.|..|...||:..|...:||:.|:...|:.::  ||..:..|..|  |:.||.:.:
plant   515 LVYQVYLGKYDAVVADTTISSNRSMYVDFSLPYTPSGVGLV--VPVKDSVRRSSTIFLMPLTLAL 577

  Fly   535 WIYVLIAYFLVSLCIYIV-GKLSPIEWKCINACDLENISIGNQFSLTDSFWFTIGTFMQQSPDIY 598
            |:..|:::|::.|.:::: .:::|         |.:.   ..|:.|:..|||:. :.|..:|...
plant   578 WLISLLSFFIIGLVVWVLEHRVNP---------DFDG---PGQYQLSTIFWFSF-SIMVFAPRER 629

  Fly   599 PRAMSTRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLASQTE-ISY------GTL 656
            ..:...|::...|.|..|::..||||:||:.|||:.:...:.|...|.::.| :.|      |.|
plant   630 VLSFWARVVVIIWYFLVLVLTQSYTASLASLLTTQHLHPTVTNINSLLAKGESVGYQSSFILGRL 694

  Fly   657 -DSGSTMTFFRDSVIETYKKIWRSMDNKKPSAFTTTYEDGIKRVNQGNYAFLMESTMLDYIVQRD 720
             |||     |.::.:.:|         ..|.........|  :...|..|.|||...:...:.:.
plant   695 RDSG-----FSEASLVSY---------GSPEHCDALLSKG--QAEGGVSAVLMEVPYVRIFLGQY 743

  Fly   721 CN---LTQIGGLLDTKGYGIATPKGSPWRDKISLAILELQERGDIQMLYDKWWKNTDETC----T 778
            ||   :.|....:|  |.|...|.|||....||.|||:::|......|.:.|:|..||:|    |
plant   744 CNKYKMVQTPFKVD--GLGFVFPIGSPLVADISRAILKVEESNKANQLENAWFKPIDESCPDPLT 806

  Fly   779 RKNTSKQSKANSLGLESIGGVFVVLIAGIIVAAVVAFFEFWYNFRYNYEATPSQ---SVVNNKYN 840
            ..:.:.......||.:|...:|  |:|.|:  ..:|..:|.|.|   .:..|:|   .|:..|:|
plant   807 NPDPNPSVSFRQLGFDSFWVLF--LVAAIV--CTMALLKFVYQF---LKENPNQRNLRVLWEKFN 864

  Fly   841 QDGILESERNYTPPDRSFWIEIAEELRYASWCMNKQKRPALTRTCSKCTIPKGQRINK 898
            :            ||:..:|                      :..:||....||.:.|
plant   865 E------------PDQKSYI----------------------KDVTKCQCSSGQGMPK 888

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 71/407 (17%)
ANF_receptor 39..371 CDD:279440 63/373 (17%)
PBP2_iGluR_Kainate 402..771 CDD:270432 96/409 (23%)
Lig_chan 533..807 CDD:278489 73/289 (25%)
GLR2.1NP_198062.2 PBP1_GABAb_receptor 49..411 CDD:107361 67/398 (17%)
ANF_receptor 49..392 CDD:279440 64/379 (17%)
GluR_Plant 452..794 CDD:270404 91/382 (24%)
Periplasmic_Binding_Protein_Type_2 478..>685 CDD:304360 57/229 (25%)
Lig_chan 576..835 CDD:278489 74/293 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.910

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