DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and GLR2.6

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_001330285.1 Gene:GLR2.6 / 830988 AraportID:AT5G11180 Length:967 Species:Arabidopsis thaliana


Alignment Length:974 Identity:204/974 - (20%)
Similarity:364/974 - (37%) Gaps:226/974 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 FLLFQFLSYGLGVPPLVRIG----AIFSNQPGMY---NSELAFRYAIHRLNMDKSLLPETTVDYY 64
            :||| |:::      ||.:|    .:...|.|:.   |:.|| ..::..:||..|          
plant    15 WLLF-FINF------LVLLGKSQQEVLQVQVGIVLDTNATLA-ALSLRAINMSLS---------- 61

  Fly    65 VEYVNRFDSFETVQKVCKLIR------VG-------------VQAVFSPTDSVLATHI------- 103
             |:.|..:.|:|  ::...||      ||             |.|:..|.:|:.|..:       
plant    62 -EFYNTHNGFKT--RIVLNIRDSKRTVVGAAASALYLIKKREVVAIIGPGNSMQAPFLINLGNQS 123

  Fly   104 ----------NSICDALDIPNIGRSAHDFSINVYPSKQLVNYAFNDVIQYLNWTR-FGILHEKEN 157
                      :.:.|:|..|...|:.||.|..|        :|.:.:|:...|.. ..|..:.|.
plant   124 QVPIISFSASSPVLDSLRSPYFIRATHDDSSQV--------HAISAIIESFRWREVVPIYADNEF 180

  Fly   158 GIINLHQLSRSFHGEVHMRQVSRDSY-VSALNEFKGKEIHNIIIDTNSNGISILLKNILQQQMNE 221
            |...|..|..:|. |:::|...|.:. |.:.::...||::.::.......|..:|.::..:..:.
plant   181 GEGILPYLVDAFQ-EINVRIRYRSAISVHSTDDLVKKELYKLMTMPTRVFIVHMLPDLGSRLFSI 244

  Fly   222 YKYHYLFTSFDLETYDLEDFKYNFVNITSFRLVDTADVGVKQILKD----IGLYSHHIFKKP--Y 280
            .|...:.|.             .:|.|.:..:.|...|..:..|::    :|:.::....|.  |
plant   245 AKEIGMMTK-------------GYVWIVTNGIADQMSVMGESSLENMHGVLGVKTYFSRSKELMY 296

  Fly   281 LNLHIKK---STILESEPALMFDSVYVFAIGLQ----TLEQSHSLTLLNISCEEENSWD------ 332
            |....:|   ...|.:.....:|:....|:.::    .:..|.|.|..|.| .::...|      
plant   297 LETRWRKRFGGEELNNFECWGYDTATALAMSIEEISSNVNMSFSQTKRNTS-RDDTGTDLDDLSF 360

  Fly   333 --GGLSLINYLNAVEWKGLTGPIQFKDGQRVQFKLDLIKLKQHSIVKVGEWTPHGHLNITEPSMF 395
              .|..|:..|..|.:||:.|..|.|:|:.......::.:::.....||.|.....|        
plant   361 ALSGPKLLQALATVSFKGVAGRFQLKNGKLEATTFKIVNIEESGERTVGFWKSKVGL-------- 417

  Fly   396 FDAGSMNVTLVVITILETPY-----------VMMHYGKNFTGNER-------------------- 429
              ..|:.|....|.|..:.:           :.:..|..|..|.:                    
plant   418 --VKSLRVNQTGIKISHSSHRLRPIIWPGDTIFVPKGWEFPTNAKKLRIAVPKKDGFNNFVEVTK 480

  Fly   430 --------FYGFCVDILETISRE----VGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYKAD 482
                    ..|||:|:.:|..|:    |.::||....||.|      ..|.::.||..:...:.|
plant   481 DANTNAPTITGFCIDVFDTAMRQMPYAVPYEYIPFETPDGK------PRGSYDEMVYHVFLGEFD 539

  Fly   483 LAVGSMTITYARESVIDFTKPFMNLGISILFKVPTSEPTRLFSFMNPLAIEIWIYVLIAYFLVSL 547
            .|||..||...|.:.:||..|:...||.::..|........:.|:.||..|:|.....::..:.:
plant   540 GAVGDTTILANRSTYVDFALPYSETGIVVVVPVKDEREKGKWVFLKPLTRELWFLTAASFLYIGI 604

  Fly   548 CIYIVGKLSPIEWKCINACDLENISIGNQFSLTDSFWFTIGTF----MQQSPDIYPRAMSTRIIS 608
            .::|      .|::.  :.|....||.|:.|  :.|:|:..|.    |:.|..|:     ||::.
plant   605 MVWI------FEYQA--SGDFRKQSIINKIS--NVFYFSFSTLFFAHMRPSESIF-----TRVLV 654

  Fly   609 STWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLA-SQTEISYGTLDSGSTMTF-------F 665
            ..|.|..||:..||||.|.:.||.:.:...:.:.:||. |...|.|.|    .:.||       :
plant   655 VVWCFVLLILTQSYTATLTSMLTVQELRPTVRHMDDLRNSGVNIGYQT----GSFTFERLKQMGY 715

  Fly   666 RDSVIETY--KKIWRSMDNKKPSAFTTTYEDGIKRVNQGNYAFLMESTMLDYIVQRDCN-LTQIG 727
            ::|.::||  .:....:..||.|             |.|..|...|...:...:.:.|: .|.|.
plant   716 KESRLKTYDTPQEMHELFLKKSS-------------NGGIDAAFDEVAYVKLFMAKYCSKYTIIE 767

  Fly   728 GLLDTKGYGIATPKGSPWRDKISLAILELQERGDIQMLYDKWWKNTDETCTRKNTSKQS-KANSL 791
            ......|:|.|.|.|||....:|..||.:.|...::.:.:||... ::.|....||... :.:..
plant   768 PTFKADGFGFAFPLGSPLVPDLSRQILNITEGETMKAIENKWLLG-EKHCLDSTTSDSPIRLDHH 831

  Fly   792 GLESIGGVFVVLIAGIIVAAVVAFFEFWYNFRYNYEATPSQSVVNNKYNQDGILESERNYTPPD 855
            ..|::..:..|:...:::|.:|.       .||..|:...:...||. ..||.:.:..|....|
plant   832 SFEALFTIVFVVSMLLLLAMLVC-------RRYRQESKSGEINANNS-PTDGNMRAPPNQPTDD 887

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 81/429 (19%)
ANF_receptor 39..371 CDD:279440 74/390 (19%)
PBP2_iGluR_Kainate 402..771 CDD:270432 99/426 (23%)
Lig_chan 533..807 CDD:278489 67/289 (23%)
GLR2.6NP_001330285.1 PBP1_GABAb_receptor_plant 38..421 CDD:380645 80/429 (19%)
GluR_Plant 460..810 CDD:270404 92/387 (24%)
Lig_chan 590..842 CDD:365843 66/284 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.910

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