DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and GLR2.4

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_001328410.1 Gene:GLR2.4 / 829299 AraportID:AT4G31710 Length:912 Species:Arabidopsis thaliana


Alignment Length:966 Identity:199/966 - (20%)
Similarity:352/966 - (36%) Gaps:227/966 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 FLLFQF-LSYGLG---VPPLVRIGAIFSNQPGMYNSELAFRYAIHRLNMDKSLLPETTVDYYVEY 67
            ||:|.| :..|.|   ...::.:|.:  ...|...|.|:.......|:...|..||:.....:.:
plant    35 FLVFIFGVKLGKGQNTTIQVINVGVV--TDVGTTASNLSLLAINMSLSDFYSSRPESRTRLLLNF 97

  Fly    68 V-NRFDSFETVQKVCKLIR-VGVQAVFSPTDSVLATHINSICDALDIPNI-----------GRSA 119
            . :|.|..........||: ..|:|:..|..::.|:.:..:.....:|.|           |||.
plant    98 ADSRDDVVGAAAAALDLIKNKEVKAILGPRTTMQASFVIEVGQKSQVPIISFSATSPFLDSGRSP 162

  Fly   120 HDFSINVYPSKQLVNYAFNDVIQYLNWTRFGILHEKENGIINLHQLSRSFHGEVHMRQVSRDSYV 184
            :.|......|.|:  .|.:::|:...|.....::|           :.:| ||..|     ....
plant   163 YFFRSTYDDSSQV--QAISEIIKVFGWREVVPVYE-----------NNAF-GEGIM-----PGLT 208

  Fly   185 SALNEFKGKEIHNIIIDTNS--NGISI-LLK------NILQQQMNEYKYHYLFTSFDLETYDLED 240
            .||.....:..:..:|..|:  :.||: |||      .:....||.:....:|:.........:.
plant   209 DALQAINIRIPYRTVISPNATDDEISVDLLKLMTKPTRVFVVHMNRFLASRVFSKARETGLMKQG 273

  Fly   241 FKYNFVN--ITSFRLVDTADVGVKQILKDIGLYSHHIFKKPYLNLHIKKSTILESEPALMFDSVY 303
            :.:...|  |....|::..|:...|.:  ||:.:|....:   .|...:|.:.::.|        
plant   274 YAWILTNGVIDHLVLMNGTDIEAMQGV--IGIRTHFPISE---ELQTFRSRLAKAFP-------- 325

  Fly   304 VFAIGLQTLEQSHSLTLLNISCEEE-------NSWDG--------------GLSLINYLNAVEWK 347
            |..:.:..|....:.|.|.::.||.       :..||              |..||..|:.:::|
plant   326 VSELNIYGLRAYDATTALAMAVEEAGTTNLTFSKMDGRNISDLEALSVSEYGPKLIRSLSQIQFK 390

  Fly   348 GLTGPIQFKDGQRVQFKLDLIKLKQHSIVKVGEWTP---------------------HGHLNITE 391
            ||:|...|.|||......:::.:.....:.||.||.                     ..|||   
plant   391 GLSGDYHFVDGQLHASVFEIVNVIDGGGILVGFWTQDKGLVKDLSPSSGTTRTFSSWKNHLN--- 452

  Fly   392 PSMFFDAGSMNVTLVVITILETPYVMMHYGKN--------------------FTGNERFYGFCVD 436
            |.::     ..:||.|....|.|    ..||.                    .|......|||:|
plant   453 PILW-----PGITLTVPKGWEIP----TNGKELQIGVPVGTFPQFVKVTTDPLTHETIVTGFCID 508

  Fly   437 ILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYKADLAVGSMTITYARESVIDFT 501
            ..|.:.:.:.:|.....:|   :|..|.:|.:                   .||...|.|.:|||
plant   509 FFEAVIQAMPYDVSHRFIP---FGDDDGKTND-------------------TTILANRSSYVDFT 551

  Fly   502 KPFMNLGISILFKVPTSEPTRLFSFMNPLAIEIWIYVLIAYFLVSLCIYIVGKLSPIEWKCINAC 566
            .|:...|:.::..:..:.......|..||...:|...|.::|:|...::|      :|.: :|: 
plant   552 LPYTTSGVGMVVPLKDNVARSSLIFFKPLTPGLWGMTLGSFFVVGFVVWI------LEHR-VNS- 608

  Fly   567 DLENISIGNQFSLTDSFWFTIGTFMQQSPDIYPRAMSTRIISSTWGFFSLIIVASYTANLAAFLT 631
               ..:...|:.::..|||.. :.|..:|.....:.:.|::..||.|..|::..||||:|::.||
plant   609 ---EFTGPPQYQISTMFWFAF-SIMVFAPRERVMSFTARVVVITWYFIVLVLTQSYTASLSSLLT 669

  Fly   632 TERMINPIENAEDLASQTEISYGTLDSGSTMTFFRDSVIETYKKIWRSMDNKKPSAFT------- 689
            |:: :||.|        |.|. ..|..|..:.:.|||.:         :...:.|.|.       
plant   670 TQQ-LNPTE--------TSIK-NVLAKGGPVAYQRDSFV---------LGKLRESGFPESRLVPF 715

  Fly   690 TTYEDGIKRVNQG------NYAFLMESTMLDYIVQRDCNLTQIGGL-LDTKGYGIATPKGSPWRD 747
            |:.|...:.:|:|      :.|| ||...:...:.:.|...::..: .|..|:|...|.|||...
plant   716 TSPEKCEELLNKGPSKGGVSAAF-MEVPYVRVFLGQYCKKYKMVEVPFDVDGFGFVFPIGSPLVA 779

  Fly   748 KISLAILELQERGDIQMLYDKWWKNTDETC----TRKNTSKQSKANSLGLESIGGVFVVLIAGII 808
            .:|.|||::.|......|...|:||.|:||    ...:.:.......|.|:|    |::|.....
plant   780 DVSRAILKVAESNKATQLETAWFKNIDKTCPDPMNNPDPNPTVSFRKLSLDS----FLLLFVAAA 840

  Fly   809 VAAVVAFFEFWYNFRYNYEATPSQSVVNNKYNQDGILESERNYTPPDRSFWIEIAE 864
            ....:|..:|...|           ::.|:.    ||..|.......:..|::..|
plant   841 TVCTLALLKFVICF-----------LIQNRI----ILNDEFYRGKRMKEMWLKFME 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 80/429 (19%)
ANF_receptor 39..371 CDD:279440 72/376 (19%)
PBP2_iGluR_Kainate 402..771 CDD:270432 91/402 (23%)
Lig_chan 533..807 CDD:278489 71/291 (24%)
GLR2.4NP_001328410.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.910

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