DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and Grid1

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_077354.1 Gene:Grid1 / 79219 RGDID:68366 Length:1009 Species:Rattus norvegicus


Alignment Length:891 Identity:250/891 - (28%)
Similarity:436/891 - (48%) Gaps:126/891 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 LVRIGAIFSNQPGMYNSELAFRYAIHRLNMDKSLLPETTVDYYVEYVNRFDSFETVQKVCKLIRV 86
            ::.|||||.....  ..:..|:.|:..|:::..:|....:.|.::.:...:.|:.||:.|.|:..
  Rat    23 IIHIGAIFEENAA--KDDRVFQLAVSDLSLNDDILQSEKITYSIKVIEANNPFQAVQEACDLMTQ 85

  Fly    87 GVQAVFSPTDSVLATHINSICDALDIPNI-------GRSAHDFSINVYPSKQLVNYA------FN 138
            |:.|:.:.|....|..:.|:.||:.||::       |.......:|..|..:....|      .|
  Rat    86 GILALVTSTGCASANALQSLTDAMHIPHLFVQRNPGGSPRTACHLNPSPDGEAYTLASRPPVRLN 150

  Fly   139 DV----IQYLNWTRFGILHEKENGIINLH----QLSRSFHGEVHMRQVSRD---SYVSALNEFKG 192
            ||    :..|.|.:|.:.::.|..|..|.    |.|| ...:|.:::|.::   .:.|.....|.
  Rat   151 DVMLRLVTELRWQKFVMFYDSEYDIRGLQSFLDQASR-LGLDVSLQKVDKNISHVFTSLFTTMKT 214

  Fly   193 KEIHNIIIDTNSNGISIL--------LKNILQQQMNEYKYHYLFTSFDLETYDLEDFKYNFV-NI 248
            :|: |...||....|.:|        :...::..:.....|::|.:.::...::.|..::.: .:
  Rat   215 EEL-NRYRDTLRRAILLLSPQGAHSFINEAVETNLASKDSHWVFVNEEISDPEILDLVHSALGRM 278

  Fly   249 TSFRLVDTADVGVKQILKDIGLYSHHIF------KKPYLNLHIKKSTILESEPALMFDSVYVFAI 307
            |..|.:..:....::.:::    :|.|.      ::.||.:       |:.....::|||.:.|.
  Rat   279 TVVRQIFPSAKDNQKCMRN----NHRISSLLCDPQEGYLQM-------LQISNLYLYDSVLMLAN 332

  Fly   308 GL-QTLEQS--HSLTLLNISCEEENSWDGGLSLINYLNAVEWKGLTGPIQFKDGQR---VQFKL- 365
            .. :.||..  ||:..||...:....|:||.|:::.:......||||.::|::...   |||:: 
  Rat   333 AFHRKLEDRKWHSMASLNCIRKSTKPWNGGRSMLDTIKKGHITGLTGVMEFREDSSNPYVQFEIL 397

  Fly   366 ----------DLIKLKQHSIVKVGEWTPHGHLN--ITEPSMFFDAGS--MNVTLVVITILETPYV 416
                      |:.||        ..|.....||  :.|..|    ||  ..:||.|:|:||.|:|
  Rat   398 GTTYSETFGKDMRKL--------ATWDSEKGLNGSLQERPM----GSRLQGLTLKVVTVLEEPFV 450

  Fly   417 MMHYGKNFTGN-ERFYGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYK 480
            |:  .:|..|. :|:.||.:|:|:.:::.:||.|.:...||.:||.:...| .||||:.:|:..:
  Rat   451 MV--AENILGQPKRYKGFSIDVLDALAKALGFKYEIYQAPDGRYGHQLHNT-SWNGMIGELISKR 512

  Fly   481 ADLAVGSMTITYARESVIDFTKPFMNLGISILFKVPTSEPTRLFSFMNPLAIEIWIYVLIAYFLV 545
            ||||:.::|||..||||:||:|.:|:..:.||.|.| .|...:||...|....:|..:..|..:|
  Rat   513 ADLAISAITITPERESVVDFSKRYMDYSVGILIKKP-EEKISIFSLFAPFDFAVWACIAAAIPVV 576

  Fly   546 SLCIYIVGKLSPIEWKCINACDLENISIGNQFSLTDSFWFTIGTFMQQSPDIYPRAMSTRIISST 610
            .:.|:::.::     :.:.:............:|..:.|...|.|:||..:....:::.||:..:
  Rat   577 GVLIFVLNRI-----QAVRSQSATQPRPSASATLHSAIWIVYGAFVQQGGESSVNSVAMRIVMGS 636

  Fly   611 WGFFSLIIVASYTANLAAFLTTERMINPIENAEDLASQTEISYGTLDSGSTMTFFR--------- 666
            |..|:||:.:|||||||||||..||.:|:...:||:.|.|:||||:...:...:||         
  Rat   637 WWLFTLIVCSSYTANLAAFLTVSRMDSPVRTFQDLSKQLEMSYGTVRDSAVYEYFRAKGTNPLEQ 701

  Fly   667 DSVIETYKKIWRSM------DN--KKPSAFTTTYEDGIKRVNQGNYAFLMESTMLDY--IVQRDC 721
            ||   |:.::||::      ||  ..||       :||::..:||||||.:..:::|  :...||
  Rat   702 DS---TFAELWRTISKNGGADNCVSNPS-------EGIRKAKKGNYAFLWDVAVVEYAALTDDDC 756

  Fly   722 NLTQIGGLLDTKGYGIATPKGSPWRDKISLAILELQERGDIQMLYDKWWKNTDETCTRKNTSKQS 786
            ::|.||..:.:||||||...|||:||..|..|||||:.||:.:|..|||.:|.......::|.|:
  Rat   757 SVTVIGNSISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWPHTGRCDLTSHSSAQT 821

  Fly   787 KANSLGLESIGGVFVVLIAGIIVAAVVAFFEFWYNFRYNYEATPSQ 832
            ...||.|.|..|||.:|..|:::|.:||..|.|:|....::.||.:
  Rat   822 DGKSLKLHSFAGVFCILAIGLLLACLVAALELWWNSNRCHQETPKE 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 86/419 (21%)
ANF_receptor 39..371 CDD:279440 79/387 (20%)
PBP2_iGluR_Kainate 402..771 CDD:270432 137/388 (35%)
Lig_chan 533..807 CDD:278489 97/292 (33%)
Grid1NP_077354.1 Interaction with CBLN1. /evidence=ECO:0000250|UniProtKB:Q61627 21..436 92/439 (21%)
PBP1_iGluR_delta_1 25..423 CDD:107387 87/420 (21%)
ANF_receptor 41..400 CDD:279440 77/371 (21%)
PBP2_iGluR_delta_1 436..806 CDD:270448 137/388 (35%)
Lig_chan 564..841 CDD:278489 97/291 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.010

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