DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ekar and Ir7e

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster


Alignment Length:696 Identity:133/696 - (19%)
Similarity:225/696 - (32%) Gaps:226/696 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   236 YDLEDFKYNFVNITSFRLVDTADVGVKQILKDIGLYSHHIFKKPYLNLHIKKSTILESEPALMFD 300
            |||...:.|.:|....|.|                            ||:....||...|:|:  
  Fly    11 YDLSGEQMNHINEFVARAV----------------------------LHVVHHYILSVTPSLV-- 45

  Fly   301 SVYVFAIGLQTLEQSHSLTLL---NISCEEEN--------SWD-GGLSLINYLNAVEWKGLTGPI 353
                             |||.   |.:|...|        .|. ..|.::|.|..|.|..:.|..
  Fly    46 -----------------LTLCCRSNHTCNFYNKMMSTLFREWGLAPLQIVNVLRGVPWHPVPGRR 93

  Fly   354 QFKDGQRVQF-----KLDLIKLKQHSIVKVGEWTPHGHLNITEPSMFFDA------GSMNVTLVV 407
            .|    .|.|     ..:.|:::.:|    .|:..:.|..|     |..|      |.|.:    
  Fly    94 HF----NVIFTDSFAAFEEIRMEYYS----REYNYNEHYFI-----FLQARDRLLQGEMRL---- 141

  Fly   408 ITILE--TPYVMMHYG---KNFTGNERFYGF-------CVDI-LETISREVGFDYI-LDLVPDRK 458
              |.:  ..|.::|..   :...|:..||.:       |.|: .:.|:|..|...: .||.| ||
  Fly   142 --IFDYCWRYRLIHCSIQVQKSNGDILFYSYYPFGEHGCSDMEPQLINRYNGSMLVEPDLFP-RK 203

  Fly   459 ----YGA----------------KDPE-----TGEWNG----MVAQLMKY--------------- 479
                :|.                :|.|     .|.:.|    .:|:.|.:               
  Fly   204 LRNFFGCPLRCALWDVPPFLTLDEDQEEVLRVNGGYEGRLLLALAEKMNFTIAVRKVHVNMRDEA 268

  Fly   480 -------KADLAVGSMTITYARESVIDFTKPFMNLGISILFKVPTSEPTRLFSF---MNPLAIEI 534
                   :.||.:|.:..|.||..|...:..:..  ...:|.|..|. ..|.||   ..|..::|
  Fly   269 LEMLRRDEVDLTLGGIRQTVARGMVATSSHNYHQ--TREVFGVLASS-YELSSFDILFYPYRLQI 330

  Fly   535 WIYVLIAYFLVSLCIYIVGKLSPIEWKCINACDLENISIGNQFSLTDSFWFTIGTFMQQSPDI-Y 598
            |:.:|....|.:|...|||::.                   :..:...||..:.......|.: .
  Fly   331 WMGILGVVALSALIQLIVGRML-------------------RERMGSRFWLNLELVFVGMPLLEC 376

  Fly   599 PRAMSTRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLASQ------TEISYGTLD 657
            ||:.:.|:.......::|||...|...|...:.|.::....:..|.|..:      |.|....||
  Fly   377 PRSHTARLYCVMLMMYTLIIRTIYQGLLYHLIRTHQLNRWPQTIESLVQKNFTVVLTPIVQEVLD 441

  Fly   658 SGSTMTFFRDSVIETYKKI---------WRSMDNKKPSA------FTTTYEDGI-KRVNQGNYAF 706
            ...::...|..::|...::         .:...:...||      |.....|.: :|..||:.|.
  Fly   442 EIPSVQHMRFRLLEANSELDPLYFLEANHQLRQHVTASALDIFIHFNRLSADKVHQRGEQGSGAH 506

  Fly   707 LMESTMLDYIVQRDCNLTQIGGLLDTKGYGIATPKGSPWRDKISLAILELQERGDIQMLYDKWWK 771
            .       .||..|....|:...|....:.|         |:::..|:.::..| :..::.:|  
  Fly   507 F-------EIVPEDIISMQLTMYLAKHSFLI---------DQLNEEIMWMRSVG-LLSVWSRW-- 552

  Fly   772 NTDETCTRKNTSKQSKANSLGLESIGGVFVVLIAGIIVAAVVAFFE 817
            ...|:..|...|.|    .||...:..:|::::.|:||..:|...|
  Fly   553 ELSESYLRNEQSFQ----VLGTMELYAIFLMVLVGLIVGLLVFILE 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 33/168 (20%)
ANF_receptor 39..371 CDD:279440 30/151 (20%)
PBP2_iGluR_Kainate 402..771 CDD:270432 83/459 (18%)
Lig_chan 533..807 CDD:278489 53/296 (18%)
Ir7eNP_001138176.1 PBPb 218..>313 CDD:214497 15/96 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463075
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.