DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and si:ch211-251b21.1

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_001138274.1 Gene:si:ch211-251b21.1 / 571720 ZFINID:ZDB-GENE-060809-5 Length:458 Species:Danio rerio


Alignment Length:435 Identity:162/435 - (37%)
Similarity:254/435 - (58%) Gaps:34/435 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   405 LVVITILETPYVMMHYGKNFTGNERFYGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEW 469
            |.|.||.|.||.|.      .|:| ..|||:|:|..||.::||.|.:.||.|.:||..| ::|.|
Zfish    25 LKVTTIKEEPYAMS------KGSE-LEGFCIDMLSAISNKLGFKYDVHLVKDGRYGKTD-DSGNW 81

  Fly   470 NGMVAQLMKYKADLAVGSMTITYARESVIDFTKPFMNLGIS-ILFKVPTSEPTRLFSFMNPLAIE 533
            |||:.::::.:||:||..:|:|..||:|:|.:||||..|:| |:.|...|:.::..|.:...:.|
Zfish    82 NGMIGEVVRGEADIAVAPLTLTAQREAVVDMSKPFMQTGLSFIMRKDLGSDDSQFLSLLKLFSTE 146

  Fly   534 IWIYVLIAYFLVSLCIYIVGKLSPIEWKCINACDLENISIGNQFSLTDSFWFTIGTFMQQSPDIY 598
            :|:.||:||.|.|:||::|.::||.||:   ..:.:|    |.|:|:.|||:|:|....|....:
Zfish   147 MWMGVLVAYLLTSICIFLVSRISPCEWE---QPEKDN----NSFTLSHSFWYTVGALTLQGAGPH 204

  Fly   599 PRAMSTRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLASQTEISYGTLDSGSTMT 663
            |:|:|.|:|:|.|..|||:::|.|.|||:.:|.::.....|:..||||:|..|.|||:...|:..
Zfish   205 PKALSGRVITSIWWIFSLVLLACYFANLSLWLHSDNQQLSIKTFEDLANQNVIEYGTIKDSSSFN 269

  Fly   664 FFRDSVIETYKKIWRSMDNKKPSAFTTTYEDGIKRVNQGNYAFLMESTMLDYIVQRDCNLTQIGG 728
            ||::|...||.:|:..:  |:..:::....:|.:|..:|||||:.||..||..|.|.||||:...
Zfish   270 FFKNSNNPTYHRIYEHI--KEAQSYSLNAAEGFRRAQKGNYAFIGESVSLDLAVARYCNLTRAPE 332

  Fly   729 LLDTKGYGIATPKGSPWRDKISLAILELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSLGL 793
            ::..:||.||.|.|||....:|:|||.|.|.|::.....|||.:   :|    .:|.||...|..
Zfish   333 IIGMRGYSIAAPLGSPLIKNLSVAILRLSESGELDYFRSKWWAS---SC----VAKDSKGAPLKP 390

  Fly   794 ESIGGVFVVLIAGIIVAAVVAFFEFWYNFRYNYEATPSQSVVNNK 838
            .|:.|||::|..|:.:...:|..|.         |..|:.|.|::
Zfish   391 ASLKGVFLLLAFGLGLGIFLALMEL---------AAKSRKVANSE 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377
ANF_receptor 39..371 CDD:279440
PBP2_iGluR_Kainate 402..771 CDD:270432 144/366 (39%)
Lig_chan 533..807 CDD:278489 104/273 (38%)
si:ch211-251b21.1NP_001138274.1 PBP2_iGluR_non_NMDA_like 25..375 CDD:270403 144/366 (39%)
Lig_chan 146..396 CDD:278489 100/265 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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