DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ekar and grin3a

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:XP_009303361.1 Gene:grin3a / 564832 ZFINID:ZDB-GENE-130530-780 Length:1111 Species:Danio rerio


Alignment Length:944 Identity:222/944 - (23%)
Similarity:364/944 - (38%) Gaps:233/944 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 DSFETVQKVCKLIRV-GVQAVFS-PTDSVLATHINSICDALDIPNIGRSAHDFSINVYPSKQLVN 134
            |....:|.||..:.| ||.|:.| |.:......:..|...|.||.|.....:|      .:|..|
Zfish   181 DPVSFLQSVCHTVIVQGVSAIISFPQNRDELVKLEFIASTLQIPVISVVQSEF------QRQTQN 239

  Fly   135 YAFNDVIQYLNWTRFGILH----------EKENGIINLHQLSRSFHGEVHM-RQVSRDSYVSALN 188
                            :||          .:.|.|.:|..::..|...:.| :|::...:|..|:
Zfish   240 ----------------LLHFQMAMQNPQTSQANLIFSLLSMNNWFDVSLVMCQQMNISDFVFLLH 288

  Fly   189 EFKGKEIHNII-IDTNSNGISILLKN----ILQQQMNEYKYHYLFTSFDLETY--DLEDFKYNFV 246
            ......:..:: |.|||:.     ||    .||.|:...|    .::..|.|:  |:.|.:..|.
Zfish   289 NNSKFHLGTVLKISTNSSS-----KNDFHIFLQAQLESIK----DSTSTLVTFGCDIRDIRRIFT 344

  Fly   247 NITSFRLVDTAD----VGVKQILKDI-------GLYSHHIFKKPYLNLHIKKSTILESEPALMFD 300
            .|..|.|: ..|    :|..|.::::       ||.:|....:|.|:.:::.:..|.:.      
Zfish   345 TIAKFGLI-LPDYHWIIGDSQNVEELRTEGLPMGLLAHGRMGEPSLDHYVQDALELVAR------ 402

  Fly   301 SVYVFAIGLQTLEQSHSLTLL--NISC---EEENSWDGGLSLINYLNAVEWKGLTGPIQFKDGQR 360
                 |:| .....|..|.|:  ..:|   .|..:...|..|..|:.:..:.||:|.|.      
Zfish   403 -----AVG-SAATVSPQLALIPGTTNCLARLEAKNLTSGTFLSRYMASTSFDGLSGCIS------ 455

  Fly   361 VQFKLDLIKLKQHSI-------------VKVGEWTPHGHLNITEPSMFFDAG------------- 399
            ||.:..:|....|.|             .::|.| .||       .:..|.|             
Zfish   456 VQEESTIISESHHFIWNLQHDPIGKPMWTRLGSW-KHG-------KVVMDYGVWPNKRRSQPGAD 512

  Fly   400 ---SMNVTLVVITILETPYVMMH--------------------------------YGKNFTGNER 429
               |..:.|.|:|::|.|:|...                                .|.|.|....
Zfish   513 WRHSSRLHLRVVTLVEHPFVFTRDVDDEGLCPAGQLCLDPLTNDTALLESLFQGLQGANDTVPLE 577

  Fly   430 F----YGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYKADLAVGSMTI 490
            |    ||:|:|:||.::.::|||:.|.:|.|.||||.  :.|.|.|:|..||...|.|||.|.:|
Zfish   578 FKKCCYGYCIDLLEKLAEDMGFDFDLYIVGDGKYGAY--KNGRWTGLVGDLMSGAAHLAVTSFSI 640

  Fly   491 TYARESVIDFTKPFMNLGISILFKV-PTSEPTRLFSFMNPLAIEIW--IYVLIAYFLVSLCIYIV 552
            ..||..|||||.||.:..:.||.:. .|:.|  :.:||.||...:|  |:|.:....|.|.:|  
Zfish   641 NSARSQVIDFTSPFFSTSLGILVRTRDTAAP--IGAFMWPLHWSMWLGIFVSLHVTAVFLTLY-- 701

  Fly   553 GKLSPIEWKCINACDLENISIGNQFSLTDS----FWFTIGTFMQQSPDIYPRAMSTRIISSTWGF 613
                  |||..........:....||.:.:    :....|......|   |:..:.|.:.:.|..
Zfish   702 ------EWKSPFGMTPRGRNRDRVFSFSSALNVCYAILFGRTAAIKP---PKCWTGRFLMNLWAI 757

  Fly   614 FSLIIVASYTANLAAFLTTERMINPIENAED--LASQTE-ISYGTLDSGSTMTFFRDSVIETY-K 674
            |.|..:::|||||||.:..|:....:....|  |...:: ..:||:         |:|..|.| |
Zfish   758 FCLFCLSTYTANLAAVMVGEKTYEQLSGIHDPKLHHPSQGFRFGTV---------RESSAEDYVK 813

  Fly   675 KIWRSMDNKKPSAFTTTYEDGIKRVN---QGNYAFLMESTMLDYIVQRDCNLTQIGGLLDTKGYG 736
            |.:..|..........|..|||..:.   |...||:|:..:|||....|  ...|..||  .|||
Zfish   814 KSFPEMHEYMRRYNAPTTPDGIDHLKDDPQKLDAFIMDKALLDYWAHAD--KXYISLLL--TGYG 874

  Fly   737 IATPKGSPWRDKISLAILELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSLGLESIGGVFV 801
            |...:.||....||..:.:.:..|.:.||:|||:|..  .|.:::.: .::...:|::...|:||
Zfish   875 IGLKQNSPLTSNISELVSQYKSDGFMDMLHDKWYKVV--PCGKRSFA-VTETLQMGIKHFSGLFV 936

  Fly   802 VLIAGIIVAAVVAFFEFWYNFRYNYEATPSQSVVNNKYNQDGILESERNYTPPDRSFWIEIAEEL 866
            :|..|:.::.:....|   :..:.:.....|....:||                   |:..::.|
Zfish   937 MLCVGVALSLLTTLGE---HIVHRWVIPRMQESTEHKY-------------------WLHTSQRL 979

  Fly   867 RYASWCMNKQKRPALTRTCSK----CTIPKGQRI 896
            ..|   :|...:....:|.:|    |.:...|::
Zfish   980 HRA---LNPTFKEDKLQTVAKPEKSCNVGNNQQM 1010

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 78/364 (21%)
ANF_receptor 39..371 CDD:279440 72/334 (22%)
PBP2_iGluR_Kainate 402..771 CDD:270432 121/418 (29%)
Lig_chan 533..807 CDD:278489 73/286 (26%)
grin3aXP_009303361.1 Periplasmic_Binding_Protein_Type_1 36..502 CDD:299141 80/378 (21%)
ANF_receptor 132..452 CDD:279440 67/314 (21%)
PBP2_iGluR_NMDA_Nr3 518..908 CDD:270438 120/417 (29%)
Lig_chan 682..941 CDD:278489 73/285 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591830
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

Return to query results.
Submit another query.