DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and grik1b

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:XP_690040.5 Gene:grik1b / 561540 ZFINID:ZDB-GENE-070821-1 Length:906 Species:Danio rerio


Alignment Length:878 Identity:356/878 - (40%)
Similarity:536/878 - (61%) Gaps:60/878 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SGFLLFQFLSYGLGVPPLVRIGAIF---SNQPGMYNSELAFRYAIHRLNMDKSLLPETTVDYYVE 66
            |..||......||....::|||.||   .|:| :...||||::|:..:|.:::|:|.||:.|.::
Zfish    46 SFILLCLMAEVGLSAQQVLRIGGIFETLENEP-ISVEELAFKFAVTNINRNRTLMPNTTLTYDIQ 109

  Fly    67 YVNRFDSFETVQKVCKLIRVGVQAVFSPTDSVLATHINSICDALDIPNI-GRSAH-------DFS 123
            .:|.|||||..::.|..:.:||.|||.|:.|...:.:.|||:||::|:| .|..|       .|.
Zfish   110 RINLFDSFEASRRACDQLALGVAAVFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDNKDSFY 174

  Fly   124 INVYPSKQLVNYAFNDVIQYLNWTRFGILHEKENGIINLHQLSRS---FHGEVHMRQV---SRDS 182
            ||:||....::.|..|::|:..|....:::|...|:|.|.:|.::   :..::.:||:   |:|:
Zfish   175 INLYPDYASISRAVLDIVQFYKWKAVTVVYEDATGLIRLQELIKAPSRYSIKIKIRQLPTGSKDA 239

  Fly   183 YVSALNEFKGKEIHNIIIDTNSNGISILLKNILQQ-QMNEYKYHYLFTSFDLETYDLEDFKYNFV 246
            ........||||. .:|.|.:....:.:||.:|.. .|.|| ||:.||:.||.:.|||.|:|:.|
Zfish   240 RPLLKEMKKGKEF-CVIFDCSYQTAADVLKQLLSMGMMTEY-YHFFFTTLDLYSLDLEPFRYSGV 302

  Fly   247 NITSFRLVDTADVGVKQILKDIGLYSHHIFKKPYLNLHIKKSTILESEPALMFDSVYVFAIGLQT 311
            |:|.|||::..:..|..:::...:.......||...|   :..::.:|.|||:|:||:.|...|.
Zfish   303 NMTGFRLLNIDNPQVASVVEKWSMERLQAPPKPETGL---QDGMMTTEAALMYDAVYMVAAASQR 364

  Fly   312 LEQSHSLTLLNISCEEENSWDGGLSLINYLNAVEWKGLTGPIQFK--DGQRVQFKLDLIKLKQHS 374
            ..|   :|:.::.|.....|..|...|:.....:|.||||.|...  ||.|..|.||:|.||:..
Zfish   365 ASQ---ITVSSLQCHRHKPWRFGSRFISMFKEAQWNGLTGQIIINKTDGLRKDFDLDIISLKEDG 426

  Fly   375 I-------------VKVGEWTPHGHLNITEPSMFFDAG---SM-NVTLVVITILETPYVMMHYGK 422
            :             .|:|.|..:..||:|:.:...:..   || |.||:|.||||.||||  |.|
Zfish   427 LEKPLESGRFNKVWKKIGVWNSNTGLNLTDSNKDKNTNVTDSMANRTLIVTTILENPYVM--YKK 489

  Fly   423 N---FTGNERFYGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYKADLA 484
            :   ..||:||.|:|:|:|:.:|..:||.|.:.||.|.||||:: :.|||||||.:|:.:.||||
Zfish   490 SDKPLYGNDRFEGYCLDLLKELSNILGFSYEVKLVTDGKYGAQN-DKGEWNGMVRELIDHVADLA 553

  Fly   485 VGSMTITYARESVIDFTKPFMNLGISILFKVPTSEPTRLFSFMNPLAIEIWIYVLIAYFLVSLCI 549
            |..:||||.||.||||:||||.||||||:..|......:|||:|||:.:||:|||:|...||..:
Zfish   554 VAPLTITYVREKVIDFSKPFMTLGISILYHKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVL 618

  Fly   550 YIVGKLSPIEWKCINACDLENISIGNQFSLTDSFWFTIGTFMQQSPDIYPRAMSTRIISSTWGFF 614
            :::.:.:|.||...:.|:.::..:.|.|:|.:|.||.:|..|||..::.|:|:||||:...|.||
Zfish   619 FVIARFTPYEWYNPHPCNPDSDVVENNFTLINSVWFGVGALMQQGSELMPKALSTRIVGGIWWFF 683

  Fly   615 SLIIVASYTANLAAFLTTERMINPIENAEDLASQTEISYGTLDSGSTMTFFRDSVIETYKKIWRS 679
            :|||::|||||||||||.|||.:||::|:|||.||:|.||.:..|||||||:.|.|.||:|:|..
Zfish   684 TLIIISSYTANLAAFLTVERMDSPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAF 748

  Fly   680 MDNKKPSAFTTTYEDGIKRVNQGNYAFLMESTMLDYIVQRDCNLTQIGGLLDTKGYGIATPKGSP 744
            |.::|.:|......:||:||...:||.|||||.::||.||:|||||||||:|:||||:.||.|||
Zfish   749 MSSRKNTALVKNNREGIQRVLTTDYALLMESTSIEYISQRNCNLTQIGGLIDSKGYGVGTPIGSP 813

  Fly   745 WRDKISLAILELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSLGLESIGGVFVVLIAGIIV 809
            :|||:::|||:|||.|.:.|:.:|||:...  |..:::   .:|::||:|:|||:|:||.||:::
Zfish   814 YRDKVTIAILQLQEEGKLHMMKEKWWRGNG--CPEEDS---KEASALGVENIGGIFIVLAAGLVL 873

  Fly   810 AAVVAFFEFWYNFRYNY---EATPSQSVVNNKY 839
            :..||..||.|..|.|.   |.:..|...:|||
Zfish   874 SVFVAIGEFIYKSRKNLDIEEVSVGQCEWHNKY 906

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 125/396 (32%)
ANF_receptor 39..371 CDD:279440 113/348 (32%)
PBP2_iGluR_Kainate 402..771 CDD:270432 195/371 (53%)
Lig_chan 533..807 CDD:278489 135/273 (49%)
grik1bXP_690040.5 Periplasmic_Binding_Protein_Type_1 62..455 CDD:299141 127/401 (32%)
ANF_receptor 80..423 CDD:279440 113/350 (32%)
Periplasmic_Binding_Protein_Type_2 471..840 CDD:304360 195/371 (53%)
Lig_chan 602..871 CDD:278489 135/273 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591610
Domainoid 1 1.000 359 1.000 Domainoid score I916
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68992
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.850

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