DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and Grik

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster


Alignment Length:913 Identity:309/913 - (33%)
Similarity:499/913 - (54%) Gaps:87/913 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GFLLFQFLSYGLGVP----PLVRIGAIFSN-QPGMYNSELAFRYAIHRLNMDKSLLPETTVDYYV 65
            ||:|...|   |..|    ....:|.::.| .|.:   |..|..||.:.|.:...|....|...:
  Fly    16 GFILTSLL---LAFPGCRGERTNVGLVYENTDPDL---EKIFHLAISKANEENEDLQLHGVSVSI 74

  Fly    66 EYVNRFDSFETVQKVCKLIRVGVQAVFSPTDSVLATHINSICDALDIPNIGRSAHDF-----SIN 125
            |..|   ||||.:|:||::|..:.|||.||.::.|.|..|||||.::|.:. :..||     :||
  Fly    75 EPGN---SFETSKKLCKMLRQNLVAVFGPTSNLAARHAMSICDAKELPFLD-TRWDFGAQLPTIN 135

  Fly   126 VYPSKQLVNYAFNDVIQYLNWTRFGILHEKENGIINLHQLSRSF---HGEVHMRQVSRD---SYV 184
            ::|....:..|..|::..|.|..|.|::|....:..:.:|.:.:   ...|.:|:...|   :|.
  Fly   136 LHPHPATLGVALRDMVVALGWESFTIIYESGEYLPTVRELLQMYGTAGPTVTVRRYELDLNGNYR 200

  Fly   185 SALNEFKGKEIHNIIIDTNSNGISILLKNILQQQMNEYKYHYLFTSFDLETYDLEDFKYNFVNIT 249
            :.|...:..:..:.::..:...:....|...|..:....|.|:..:.|..|.|||.:::...|||
  Fly   201 NVLRRIRNADDFSFVVVGSMATLPEFFKQAQQVGLVTSDYRYIIGNLDWHTMDLEPYQHAGTNIT 265

  Fly   250 SFRLVDTADVGVKQILKDIGLYSHHIFKKPYLNLHIKKSTILESEPALMFDSVYVFAIGLQTLEQ 314
            ..|||......|:::.|  .||..   ::|:.|:    |..|.:..||::|       |:|.|.:
  Fly   266 GLRLVSPDSEQVQEVAK--ALYES---EEPFQNV----SCPLTNSMALVYD-------GVQLLAE 314

  Fly   315 SH---SLTLLNISCEEENSWDGGLSLINYLNAVEWKGLTGPIQFK-DGQRVQFKLDLIKLKQHSI 375
            ::   :...:.:||.::::||.|.:|:||:.::...||||||:|. :|.|..|||::|:|....:
  Fly   315 TYKHVNFRPVALSCNDDSAWDKGYTLVNYMKSLTLNGLTGPIRFDYEGLRTDFKLEVIELAVSGM 379

  Fly   376 VKVGEWTPHGHLNITEP----SMFFDAGSM-NVTLVVITILETPYVMM-HYGKNFTGNERFYGFC 434
            .|:|:|:.........|    |:..|..|: |.:.||||.:..||.|: ...:...||::|.||.
  Fly   380 QKIGQWSGEDGFQENRPAPAHSLEPDMRSLVNKSFVVITAISEPYGMLKETSEKLEGNDQFEGFG 444

  Fly   435 VDILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYKADLAVGSMTITYARESVID 499
            :::::.:|:::||.|...|..|.|||..||:|||||||:.:::..:||:.:..:|:|..|||.:|
  Fly   445 IELIDELSKKLGFSYTWRLQEDNKYGGIDPKTGEWNGMLREIIDSRADMGITDLTMTSERESGVD 509

  Fly   500 FTKPFMNLGISILFKVPTSEPTRLFSFMNPLAIEIWIYVLIAYFLVSLCIYIVGKLSPIEWKCIN 564
            ||.|||:|||.|||:.|..||.:|||||:|.:.|:|:::.:||..||:.::::|:|||.||....
  Fly   510 FTIPFMSLGIGILFRKPMKEPPKLFSFMSPFSGEVWLWLGLAYMGVSISMFVLGRLSPAEWDNPY 574

  Fly   565 ACDLENISIGNQFSLTDSFWFTIGTFMQQSPDIYPRAMSTRIISSTWGFFSLIIVASYTANLAAF 629
            .|..|...:.||||..:..||:||..:||..::.|:|.|||.::::|.||:||:|:|||||||||
  Fly   575 PCIEEPTELENQFSFANCLWFSIGALLQQGSELAPKAYSTRAVAASWWFFTLILVSSYTANLAAF 639

  Fly   630 LTTERMINPIENAEDLA-SQTEISYGTLDSGSTMTFFRDSVIETYKKIWRSM-DNKKPSAFTTTY 692
            ||.|.::.||.:|:||: ::..::||....|:|..||::|...||::::..| ||  |...|.|.
  Fly   640 LTVESLVTPINDADDLSKNKGGVNYGAKIGGATFNFFKESNYPTYQRMYEFMRDN--PQYMTNTN 702

  Fly   693 EDGIKRVNQGNYAFLMESTMLDYIVQRDCNLTQIGGLLDTKGYGIATPKGSPWRDKISLAILELQ 757
            ::|:.||...|||||||||.::||.:|.|.|||:|.|||.||||||..|..|:||.:|.|:||:|
  Fly   703 QEGVDRVENSNYAFLMESTTIEYITERRCTLTQVGALLDEKGYGIAMRKNWPYRDTLSQAVLEMQ 767

  Fly   758 ERGDIQMLYDKWW--KNTDETCTRKNTSKQSKANSLGLESIGGVFVVLIAGIIVAAVVAFFEFWY 820
            |:|.:..:..|||  |.....|:  :..:.|.|.:|.:.::||||:|:..|......|:..|...
  Fly   768 EQGLLTKMKTKWWQEKRGGGACS--DADEDSGAVALEISNLGGVFLVMGVGSFFGIFVSLLEMVL 830

  Fly   821 NFRYNYEATPSQSVVNNKYNQDGILE-SERNYTPPDRSFWIEIAEELRYASWCMNKQKRPALTRT 884
                                  |:.| |:.|..    ||..|:.:|:|:...|....|.....:.
  Fly   831 ----------------------GVKERSDENQV----SFKTELLDEIRFILQCSGNTKAVKYPKN 869

  Fly   885 CSK 887
            .|:
  Fly   870 SSR 872

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 105/379 (28%)
ANF_receptor 39..371 CDD:279440 98/346 (28%)
PBP2_iGluR_Kainate 402..771 CDD:270432 169/373 (45%)
Lig_chan 533..807 CDD:278489 120/277 (43%)
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 105/376 (28%)
ANF_receptor 53..374 CDD:279440 96/340 (28%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 168/371 (45%)
Lig_chan 543..816 CDD:278489 120/276 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462874
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 495 1.000 Inparanoid score I765
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
98.900

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