DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and GluRIA

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster


Alignment Length:981 Identity:296/981 - (30%)
Similarity:492/981 - (50%) Gaps:168/981 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VRIGAIFSNQPGMYNSELAFRYAI--HRLNMDKSLLPETTVDYYVEYVNRFDSFETVQKVCKLIR 85
            :.:||||  :.|..:.:.||:||:  |.||:...   ...:..||:.:|..|:|:..:.:|....
  Fly    40 IPLGAIF--EQGTDDVQSAFKYAMLNHNLNVSSR---RFELQAYVDVINTADAFKLSRLICNQFS 99

  Fly    86 VGVQAVF---SPTDSVLATHINSICDALDIPNI-----------GRSAHDFSINVYPSKQLVNYA 136
            .||.::.   || ||....|  |..:...:|.:           .....||:|::.|.   .:.|
  Fly   100 RGVYSMLGAVSP-DSFDTLH--SYSNTFQMPFVTPWFPEKVLAPSSGLLDFAISMRPD---YHQA 158

  Fly   137 FNDVIQYLNWTRFGILHEKENGIINLHQLSRSF---HGEVHMRQVSRDSYVSALNEFKGKEIH-- 196
            ..|.|||..|.....|::..:|::.|.|:.:..   :....::.|.|.:.|:...||    :|  
  Fly   159 IIDTIQYYGWQSIIYLYDSHDGLLRLQQIYQELKPGNETFRVQMVKRIANVTMAIEF----LHTL 219

  Fly   197 ---------NIIIDTNSNGISILLKNILQQQMNEYK-----YHYLFTSFDLETYDLED-FKYNFV 246
                     .|::|..:.    :.|.|:.|.:.:.|     ||||.:...::.:...| .::..:
  Fly   220 EDLGRFSKKRIVLDCPAE----MAKEIIVQHVRDIKLGRRTYHYLLSGLVMDNHWPSDVVEFGAI 280

  Fly   247 NITSFRLVDTADVGVKQI------LKDIGLYSHHIFKKPYLNLHIKKSTILESEPALMFDSVYVF 305
            |||.||:||:....|:..      |:..|.........|      .....:.::.|||:|:|:|.
  Fly   281 NITGFRIVDSNRRAVRDFHDSRKRLEPSGQSQSQNAGGP------NSLPAISAQAALMYDAVFVL 339

  Fly   306 AIGLQTL--------------EQSH------SLTLLN-----ISCEEENS----WDGGLSLINYL 341
            ......:              .:||      |.|..|     :.|.....    |:.|..:...|
  Fly   340 VEAFNRILRKKPDQFRSNHLQRRSHGGSSSSSATGTNESSALLDCNTSKGWVTPWEQGEKISRVL 404

  Fly   342 NAVEWKGLTGPIQF-KDGQRVQFKLDLIKLKQHS-IVKVGEWTP-------HGHLNITEPSMFFD 397
            ..||..||:|.|:| :||:|:.:.|.::::..:| :.:|.||..       |.| |....|....
  Fly   405 RKVEIDGLSGEIRFDEDGRRINYTLHVVEMSVNSTLQQVAEWRDDAGLLPLHSH-NYASSSRSAS 468

  Fly   398 AGS----MNVTLVVITILETPYVMMH---YGKNFTGNERFYGFCVDILETISREVGFDYILDLVP 455
            |.:    .|.|.:|.::||.||:.:.   ||::..||:||.|:|.|:.:.::.::|..|.:.||.
  Fly   469 ASTGDYDRNHTYIVSSLLEEPYLSLKQYTYGESLVGNDRFEGYCKDLADMLAAQLGIKYEIRLVQ 533

  Fly   456 DRKYGAKDP-ETGEWNGMVAQLMKYKADLAVGSMTITYARESVIDFTKPFMNLGISILFKVPTSE 519
            |..|||::. ..|.|:|||.:|::.:||:|:.:||||..||.||||:||||.|||||:.|.|..:
  Fly   534 DGNYGAENQYAPGGWDGMVGELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKKPVKQ 598

  Fly   520 PTRLFSFMNPLAIEIWIYVLIAYFLVSLCIYIVGKLSPIEWKCINACDLENIS------IG---- 574
            ...:|||:|||:.||||.|:::|..||..:|.|.:..|.||:.:.....::.:      ||    
  Fly   599 TPGVFSFLNPLSQEIWISVILSYVGVSFVLYFVTRFPPYEWRIVRRPQADSTAQQPPGIIGGATL 663

  Fly   575 ------------NQFSLTDSFWFTIGTFMQQSPDIYPRAMSTRIISSTWGFFSLIIVASYTANLA 627
                        |:|::.:|||:::..||||..||.|.:::.||.::.|.||::|:::|||||||
  Fly   664 SEPQAHVPPVPPNEFTMLNSFWYSLAAFMQQGCDITPPSIAGRIAAAVWWFFTIILISSYTANLA 728

  Fly   628 AFLTTERMINPIENAEDLASQTEISYGTLDSGSTMTFFRDSVIETYKKIWRSMD-NKKPSAFTTT 691
            ||||.|||:.||:..|||..||:::||||..|||..|||.|.|..:.|:|..|: |:..|..  |
  Fly   729 AFLTVERMVAPIKTPEDLTMQTDVNYGTLLYGSTWEFFRRSQIGLHNKMWEYMNANQHHSVH--T 791

  Fly   692 YEDGIKRVNQ--GNYAFLMESTMLDYIVQR-DCNLTQIGGLLDTKGYGIATPKGSPWRDKISLAI 753
            |::||:||.|  |.||.|:||...:|:..| .|:..::|..:||||:|:|||.|||.|.:::.|:
  Fly   792 YDEGIRRVRQSKGKYALLVESPKNEYVNARPPCDTMKVGRNIDTKGFGVATPIGSPLRKRLNEAV 856

  Fly   754 LELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSLGLESIGGVFVVLIAGIIVAAVVAFFEF 818
            |.|:|.|::..:.:|||.:..|....:.|   |..|.|.|.::.|::.:||.|:::|.:||..||
  Fly   857 LTLKENGELLRIRNKWWFDKTECNLDQET---STPNELSLSNVAGIYYILIGGLLLAVIVAIMEF 918

  Fly   819 WYNFRYNYEATPSQS---------VVNNKYNQDGI------------LESERNYTPPDRSFWIEI 862
            :...:.....:|..:         :.::.|.:|.:            :::...|  .:|...:|:
  Fly   919 FCRNKTPQLKSPGSNGSAGGVPGMLASSTYQRDSLSDAIMHSQAKLAMQASSEY--DERLVGVEL 981

  Fly   863 AEELRY 868
            |..:||
  Fly   982 ASNVRY 987

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 101/443 (23%)
ANF_receptor 39..371 CDD:279440 90/403 (22%)
PBP2_iGluR_Kainate 402..771 CDD:270432 167/398 (42%)
Lig_chan 533..807 CDD:278489 117/299 (39%)
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375 99/436 (23%)
ANF_receptor 53..434 CDD:279440 90/403 (22%)
PBP2_iGluR_AMPA 477..879 CDD:270433 168/403 (42%)
Lig_chan 612..907 CDD:278489 117/299 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462573
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
87.740

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