DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and gria3b

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_938174.1 Gene:gria3b / 368416 ZFINID:ZDB-GENE-030616-53 Length:883 Species:Danio rerio


Alignment Length:900 Identity:310/900 - (34%)
Similarity:476/900 - (52%) Gaps:88/900 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 FLLFQFLSYGLGVPPLVRIGAIFSNQPGMYNSELAFRYAIHRLNMDKSLLPET-TVDYYVEYVNR 70
            |||:.|.:...|.|..:.||.:|.......:|  |||:|:...|.::::..:. .::|.|:.:..
Zfish     8 FLLWLFGTSLAGFPNQINIGGLFMRSTVQEHS--AFRFAVQLYNTNQNMTEKPFHLNYNVDNLES 70

  Fly    71 FDSFETVQKVCKLIRVGVQAVFSPTDSVLATHINSICDALDIPNIGRSAHDFSINVYPSKQLVNY 135
            .:||......|.....||.|:|...|......:.|.|.||..        .|....||....|.:
Zfish    71 SNSFSVTHAFCSQFSRGVYAIFGFYDKKSMNTLTSFCGALHT--------SFVTPSYPIDSDVQF 127

  Fly   136 ----------AFNDVIQYLNWTRFGILHEKENGIINLHQLSRSF---HGEVHMRQVSR----DSY 183
                      |...::.:..|.:|..|::.:.|...|..:..:.   :.:|..|.|..    ..:
Zfish   128 VIQMRPPLKGAVLSLLSHYKWDKFVYLYDTDRGFSILQAIMEAAVANNWQVTARSVGSITDPQEF 192

  Fly   184 VSALNEFKGKEIHNIIIDTNSNGISILLKNILQQQMNEYKYHYLFTSFDLETYDLEDFKYNFVNI 248
            ...:.|...::....:||...:.|:::|:.::....|...|||:..:.......|:.......||
Zfish   193 RRIIEEMDRRQEKRYLIDCEVDRINVILEQVVTLGKNSRGYHYIIANLGFTNISLDKVFLGGANI 257

  Fly   249 TSFRLVDTADVGVKQILKDIGLYSHHIFKKPYLNLHIKKSTILESEPALMFDSVYVFAIGLQTLE 313
            :.|::::..::.|:|.|:.........|.:       .|:|.|:...||.:|::.|.|...:.|.
Zfish   258 SGFQIINPENLVVQQFLQRWDRLDEREFPE-------AKNTPLKYTSALSYDAILVIAEAFRYLR 315

  Fly   314 QSHSLTLLNISCEEENS-----------WDGGLSLINYLNAVEWKGLTGPIQFKD-GQRVQFKLD 366
            :.      .:......|           |..|:.:...|..|:.:|:||.|||.. |:|..:.:|
Zfish   316 RQ------RVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDSFGRRTNYTID 374

  Fly   367 LIKLKQHSIVKVGEWTP-HGHLNITEPSMFFDAGSM-NVTLVVITILETPYVMMHYGKN---FTG 426
            :.::|.....|:|.|.. ...:||.:.....|:.|: |.|:||.||:|.||||  |.||   ..|
Zfish   375 VYEMKTGGPRKIGYWNEFERFVNIMDQQFTNDSSSVENRTIVVTTIMEAPYVM--YKKNHMHLEG 437

  Fly   427 NERFYGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYKADLAVGSMTIT 491
            ||::.|:|||:...|::.||..|.|.:|.|.||||:||||..|||||.:|:..:||:||..:|||
Zfish   438 NEKYEGYCVDLASEIAKHVGIKYRLSIVMDGKYGARDPETKSWNGMVGELVYGRADIAVAPLTIT 502

  Fly   492 YARESVIDFTKPFMNLGISILFKVPTSEPTRLFSFMNPLAIEIWIYVLIAYFLVSLCIYIVGKLS 556
            ..||.||||:||||:|||||:.|.|......:|||::|||.|||:.::.||..||:.:::|.:.|
Zfish   503 LVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFS 567

  Fly   557 PIEWKCINACDLENISI----GNQFSLTDSFWFTIGTFMQQSPDIYPRAMSTRIISSTWGFFSLI 617
            |.||:.....::::...    .|.|.:.:|.||::|.||||..||.||::|.||:...|.||:||
Zfish   568 PYEWQLDETDEVKDPQTPPDPPNDFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLI 632

  Fly   618 IVASYTANLAAFLTTERMINPIENAEDLASQTEISYGTLDSGSTMTFFRDSVIETYKKIWRSMDN 682
            |::|||||||||||.|||::|||:|||||.||||:|||||||||..|||.|.|..|:|:|..|.:
Zfish   633 IISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWSYMKS 697

  Fly   683 KKPSAFTTTYEDGIKRV--NQGNYAFLMESTMLDYIVQR-DCNLTQIGGLLDTKGYGIATPKGSP 744
            .:||.|..|..||:.||  ::|.:|||:||||.:||.|| .|:..::||.||:||||:||||||.
Zfish   698 AEPSVFAKTTPDGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSA 762

  Fly   745 WRDKISLAILELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSLGLESIGGVFVVLIAGIIV 809
            .|:.::||:|:|.|:|.:..|.:|||.:..| |.......:.|.::|.|.::.|||.:|:.|:.:
Zfish   763 LRNAVNLAVLKLNEQGLLDKLKNKWWYDKGE-CGSGGGDSKDKTSALSLSNVAGVFYILVGGLGL 826

  Fly   810 AAVVAFFEFWYNFR------------YNYEATPSQSVVN--------NKYNQDGI 844
            |.:||..||.|..|            .||:..|..:..|        |.|..:.:
Zfish   827 AMMVALIEFCYKSRAEAKRLKLEKNAQNYKPAPPANTQNFATYREGYNVYGTESV 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 80/394 (20%)
ANF_receptor 39..371 CDD:279440 72/361 (20%)
PBP2_iGluR_Kainate 402..771 CDD:270432 196/378 (52%)
Lig_chan 533..807 CDD:278489 134/280 (48%)
gria3bNP_938174.1 Periplasmic_Binding_Protein_Type_1 25..396 CDD:299141 80/393 (20%)
ANF_receptor 36..379 CDD:279440 73/365 (20%)
PBP2_iGluR_AMPA 412..794 CDD:270433 198/384 (52%)
Lig_chan 544..824 CDD:278489 134/280 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591877
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.640

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