DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and GluRIIA

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster


Alignment Length:941 Identity:289/941 - (30%)
Similarity:457/941 - (48%) Gaps:146/941 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VRIGAIF-SNQPGMYNSELAFRYAIHRL-NMDKSLLPETTVDYYVEYVNRFDSFETVQKVCKLIR 85
            :.:|||| .|:..:   ||:|..|...: ||..|.|...|:.   .|:...|||...|..|:||.
  Fly    32 ITVGAIFYENEKEI---ELSFDQAFREVNNMKFSELRFVTIK---RYMPTNDSFLLQQITCELIS 90

  Fly    86 VGVQAVFSPTDSVLATHINSICDALDIPNI-----------GRSAHDFSINVYPSKQLVNYAFND 139
            .||.|:|.|:....:..:..|.:|..||:|           .:..|..||||.||..:::.|:.:
  Fly    91 NGVAAIFGPSSKAASDIVAQIANATGIPHIEYDLKLEATRQEQLNHQMSINVAPSLSVLSRAYFE 155

  Fly   140 VIQ-YLNWTRFGILHEKENG------IINLHQLSRSFHGEVHMRQVS--RDSYVSALNEFKGKEI 195
            :|: ...|..|.:::|...|      ::|:..|:..:   |.:|.::  .|.|.....| ..:..
  Fly   156 IIKSNYEWRTFTLIYETPEGLARLQDLMNIQALNSDY---VKLRNLADYADDYRILWKE-TDETF 216

  Fly   196 H--NIIIDTNSNGISILLKNILQQQMNEYKYHYLFTSFDLETYDL-----EDFKYNFVNITSFRL 253
            |  .||:|.....:..|||..:..::.....::..|..|.....|     ||||   .||||.||
  Fly   217 HEQRIILDCEPKTLKELLKVSIDFKLQGPFRNWFLTHLDTHNSGLRDIYNEDFK---ANITSVRL 278

  Fly   254 --VD--------TADVGVKQILKDIGLYSHHIFKKPYLNLHIKKSTILESEPALMFDSVYVFAIG 308
              ||        |....|.|||.:                    .|:|   |.|::|:|.:||..
  Fly   279 KVVDANPFERKKTRLTKVDQILGN--------------------QTML---PILIYDAVVLFASS 320

  Fly   309 ----LQTLEQSHSLTLLNISCEEENSWDGGLSLINYLNAVEWKGLTGPIQFKD------GQRVQF 363
                :..::..|.   .|..|...:.|..|..::|.:..:....:....:.::      |||:.|
  Fly   321 ARNVIAAMQPFHP---PNRHCGSSSPWMLGAFIVNEMKTISEDDVEPHFKTENMKLDEYGQRIHF 382

  Fly   364 KLDLIKLKQHSIVKVGEWTPHG-------HLNITEPSMFFDAGSMNVTLVVITILETPYVMM--- 418
            .|::.|...:..:.|  |||..       :|.:.......|.........|:|..|.||.||   
  Fly   383 NLEIYKPTVNEPMMV--WTPDNGIKKRLLNLELESAGTTQDFSEQRKVYTVVTHYEEPYFMMKED 445

  Fly   419 HYGKNFTGNERFYGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYKADL 483
            |  :||.|.|::.|:.||::..:|..:.|||...:|...  |..:|||.:|:|::.:|:.:.|.:
  Fly   446 H--ENFRGREKYEGYAVDLISKLSELMEFDYEFMIVNGN--GKYNPETKQWDGIIRKLIDHHAQI 506

  Fly   484 AVGSMTITYARESVIDFTKPFMNLGISILFKVPTSEPTRLFSFMNPLAIEIWIYVLIAYFLVSLC 548
            .|..:|||..|.||:|||.|||.||||||......||...|:|:.|.|:|:|||::.|..:::|.
  Fly   507 GVCDLTITQMRRSVVDFTVPFMQLGISILHYKSPPEPKNQFAFLEPFAVEVWIYMIFAQLIMTLA 571

  Fly   549 IYIVGKLSPIEWKCINAC-----DLENISIGNQFSLTDSFWFTIGTFMQQSPDIYPRAMSTRIIS 608
            ...:.:||..||...|..     :||||     :::.:|.|..:|:.|||..||.||....||::
  Fly   572 FVFIARLSYREWLPPNPAIQDPDELENI-----WNVNNSTWLMVGSIMQQGCDILPRGPHMRILT 631

  Fly   609 STWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLASQTEISYGTLDSGSTMTFFRDSVIETY 673
            ..|.||:|:::::||||||||||:.:..:.|::.:||..|.::.:|::..|||..||.:|....|
  Fly   632 GMWWFFALMMLSTYTANLAAFLTSNKWQSSIKSLQDLIEQDKVHFGSMRGGSTSLFFSESNDTDY 696

  Fly   674 KKIWRSMDNKKPSAFTTTYEDGIKRV--NQGNYAFLMESTMLDYIVQRDCNLTQIGGLLDTKGYG 736
            ::.|..|.:..|||||:|.::|:.||  .:|.||||||:|.|.|.::|:|:|||||..:..|.||
  Fly   697 QRAWNQMKDFNPSAFTSTNKEGVARVRKEKGGYAFLMETTSLTYNIERNCDLTQIGEQIGEKHYG 761

  Fly   737 IATPKGSPWRDKISLAILELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSLGLESIGGVFV 801
            :|.|.||.:|..:|::||:|.|||::|.:.:|||||.:.||   ::..:...:.|.:..:||||:
  Fly   762 LAVPLGSDYRTNLSVSILQLSERGELQKMKNKWWKNHNVTC---DSYHEVDGDELSIIELGGVFL 823

  Fly   802 VLIAGIIVAAVVAFFEFWYNFRYNYEATPSQSVVNNKYNQDGILESERNYTPPDRSFWIEIAEEL 866
            ||..|:::..::..|||.:|             |.|       :..|...||     |.....||
  Fly   824 VLAGGVLIGVILGIFEFLWN-------------VQN-------VAVEERVTP-----WQAFKAEL 863

  Fly   867 RYA--SWCMNKQKRPALTRTCSKCTIPKGQR 895
            .:|  .|...|..|.:.:...|......|.|
  Fly   864 IFALKFWVRKKPMRISSSSDKSSSRRSSGSR 894

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 103/419 (25%)
ANF_receptor 39..371 CDD:279440 94/379 (25%)
PBP2_iGluR_Kainate 402..771 CDD:270432 152/378 (40%)
Lig_chan 533..807 CDD:278489 111/280 (40%)
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 103/411 (25%)
ANF_receptor 46..386 CDD:279440 93/375 (25%)
PBP2_iGluR_Kainate 426..796 CDD:270432 152/378 (40%)
Lig_chan 556..828 CDD:278489 111/279 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462689
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
87.750

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