DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and GluRIIC

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster


Alignment Length:942 Identity:269/942 - (28%)
Similarity:465/942 - (49%) Gaps:149/942 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VRIGAIFSNQPGMYNSEL----AFRYAIHRLNMDKSLLPETTVDYY--VEYVNRFDSFETVQK-V 80
            :.|||.|      |:.||    .|...::.:|..:|   |.|:.:|  ::.:...|...|:|: .
  Fly    25 INIGAFF------YDDELELEKEFMTVVNAINGPES---EQTMRFYPLIKRLKPEDGSVTMQEHA 80

  Fly    81 CKLIRVGVQAVFSPTDSVLATHINSICDALDIPNI-------GRSA----HDFSINVYPSKQLVN 134
            |.||..||.|:|.|:....:..:..:|::..||:|       |..|    |..::|:||::.:::
  Fly    81 CDLIDNGVAAIFGPSSKAASDIVALVCNSTGIPHIEFDISDEGIQAEKPNHQMTLNLYPAQAILS 145

  Fly   135 YAFNDVIQYLNWTRFGILHEKENG-----IINLHQLSRSFHGEVHMRQVSRDSYVSAL-NEFKGK 193
            .|:.|::|...|.:|.|:::.::.     :.:|.||....:..|.:|:..:|.....: ...:|:
  Fly   146 KAYADIVQNFGWRKFTIVYDADDARAAARLQDLLQLREVHNDVVRVRKFHKDDDFRVMWKSIRGE 210

  Fly   194 EIHNIIIDTNSNGISILLKNILQQQMNEYKYHYLFTSFDLETY---------DLEDFKYNFVNIT 249
              ..:::|...|.:..||.:..:..:.. :|:::|.: :||||         |.|.|.   ||||
  Fly   211 --RRVVLDCEPNMLVELLNSSTEFGLTG-QYNHIFLT-NLETYTDHLEELAADNETFA---VNIT 268

  Fly   250 SFRLVDTADVGVKQILKDIGLYSHHIFKKPYLNLHIKKSTILE-SEPA------LMFDSVYVFAI 307
            :.||:...|...              :..||..:..:.:.:.| |:|.      |:.|::.:||.
  Fly   269 AARLLVNPDPPP--------------YSLPYGYVTQRDNIVYESSDPPRTLIHDLIHDALQLFAQ 319

  Fly   308 GLQTLE--QSHSLTLLNISCEEENS----WDGGLSLINYLNAVEWKGLTGP---------IQF-K 356
            ..:...  ....:.:..|:|:...|    |..|..|...:     ||.:|.         :|| :
  Fly   320 SWRNASFFYPDRMVVPRITCDFAASGGRTWAMGRYLARLM-----KGTSGVNNTNFRTSILQFDE 379

  Fly   357 DGQRVQFKLDLIKLKQHSIVKVGEWTPHG---HLNI---TEPSMFFDAGSMNVTLVVITILETPY 415
            ||||:.|.:::......  :.:..|.|.|   .||:   .:..|.:.         |.|.:..||
  Fly   380 DGQRITFNIEVYDPLDG--IGIAIWDPRGQITQLNVDVKAQKKMIYR---------VATRIGPPY 433

  Fly   416 VMMHYGK-----NFTGNERFYGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQ 475
              ..|.:     |.|||..:.|:.||:::.|:|.|||:|:...|.|::||..|.||.:|||::.:
  Fly   434 --FSYNETARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVADQQYGKLDKETKQWNGIIGE 496

  Fly   476 LMKYKADLAVGSMTITYARESVIDFTKPFMNLGISIL-FKVPTSEPTRLFSFMNPLAIEIWIYVL 539
            ::...|.:.:..:|||.||::.:|||.|||.||:||| :|.|..|.| |.:::.|...|:||::|
  Fly   497 IINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEKT-LDAYLAPFGGEVWIWIL 560

  Fly   540 IAYFLVSLCIYIVGKLSPIEWKCINACDLENISIGNQFSLTDSFWFTIGTFMQQSPDIYPRAMST 604
            |:.|:::....||.::|.::|:..:.|:.:...:.||:.:.::.|.|:.:.|....||.||:...
  Fly   561 ISVFVMTFLKTIVARISKMDWENPHPCNRDPEVLENQWRIHNTGWLTVASIMTAGCDILPRSPQV 625

  Fly   605 RIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLASQTEISYGTLDSGSTMTFFRDSV 669
            |:..:||..|::||..|||||||||||:.:|...|.|.:||::|.::.:||:..|||.....||.
  Fly   626 RMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQKKVKFGTIYGGSTYNLLADSN 690

  Fly   670 IETYKKIWRSMDNKKPSAFTTTYEDGIKRV--NQGNYAFLMESTMLDYIVQRDCNLTQIGGLLDT 732
            ...|:..:..|:|..|||:|....:|:.||  |:|:|.||||:|.|:|..:::|:|..:|.....
  Fly   691 ETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMETTTLEYHREQNCDLRSVGEKFGE 755

  Fly   733 KGYGIATPKGSPWRDKISLAILELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSLGLESIG 797
            |.|.||.|.|:.:|..:|:|||:|.|||::..|..|||||.:.:|..:  ........:..|.:.
  Fly   756 KHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQKWWKNPNASCFEE--PDPDATPDMTFEELR 818

  Fly   798 GVFVVLIAGIIVAAVVAFFEFWYNFRYNYEATPSQSVVNNKYNQDGILESERNYTPPDRSFWIEI 862
            |:|..|.|||::|.::...||..                  |.|...|| ||      .:|....
  Fly   819 GIFYTLYAGILIAFLIGITEFLV------------------YVQQVALE-ER------LTFKDAF 858

  Fly   863 AEELRYASWCMNKQKRPALTRT--CSKCTIPK 892
            .:|:|:. .|:...::|.:..|  .|..|.|:
  Fly   859 KKEIRFV-LCVWNNRKPIVAGTPISSVRTTPR 889

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 95/422 (23%)
ANF_receptor 39..371 CDD:279440 87/387 (22%)
PBP2_iGluR_Kainate 402..771 CDD:270432 142/376 (38%)
Lig_chan 533..807 CDD:278489 100/275 (36%)
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 93/414 (22%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 17/102 (17%)
PBP2_iGluR_Kainate 423..794 CDD:270432 142/382 (37%)
Lig_chan 554..828 CDD:278489 100/275 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462693
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S6275
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
76.900

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