DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and GluRIIE

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster


Alignment Length:872 Identity:287/872 - (32%)
Similarity:449/872 - (51%) Gaps:75/872 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VRIGAIFSNQPGMYNSELAFRYAIHRLNMDKSLLPETTVDYYVEYVNRFDSFETVQKVCKLIRVG 87
            |.||.:........|  :.|.:||...|.:..    |::....|.||..|::::..|:|:::..|
  Fly    39 VPIGLLTDQNTEQMN--IVFDHAIDVANQEVG----TSLTSLKEEVNYGDAYQSYGKLCRMLETG 97

  Fly    88 VQAVFSPTDSVLATHINSICDALDIPNI----GRSAHDFSINVYPSKQLVNYAFNDVIQYLNWTR 148
            :..||.|:....|.|:.|||||:|||:|    ..:|..|:::.:|:.  :..|...:|...||||
  Fly    98 IAGVFGPSSRHTAVHLMSICDAMDIPHIYSYMSENAEGFNLHPHPAD--LAKALYSLITEFNWTR 160

  Fly   149 FGILHEKENGIINLHQLSRSFHGEVHMRQVSR------DSYVSALNEFKGKEIHNIIIDTNSNGI 207
            |..|:|....:..|::|:........:..|.|      .:|...|...: |.:.|.|:...|:..
  Fly   161 FIFLYESAEYLNILNELTTMLGKSGTVITVLRYDMQLNGNYKQVLRRVR-KSVDNRIVVVGSSET 224

  Fly   208 SILLKNILQQQ--MNEYKYHYLFTSFDLETYDLEDFKYNFVNITSFRLVDTADVGVKQILKDIGL 270
            .....|..||.  :|| .|.|:..:.|..::|||::||:..|||..||.....:.||::|..:| 
  Fly   225 MPEFLNQAQQVGIINE-DYKYIIGNLDFHSFDLEEYKYSEANITGLRLFSPEKMAVKELLMKLG- 287

  Fly   271 YSHHIFKKPYLNLHIKKSTILESEPALMFDSVYVFAIGLQTLEQSHSLTL-LNISCEEENSWDGG 334
              :...:..:.|    .|..:..|.||.:|:|.:||   |||:......: .|.|...|:..|.|
  Fly   288 --YPTDQDEFRN----GSCPITVEMALTYDAVQLFA---QTLKNLPFKPMPQNCSQRTESVRDDG 343

  Fly   335 LSLINYLNAVEW--KGLTGPIQFKDGQRVQFKLDLIKLKQHSIVKVGEW------TPHGHLNITE 391
            .|..||:..:..  :.|||||.|:...|..:.||:|:|:...|||||.|      .|......|.
  Fly   344 SSFKNYMRTLRLTDRLLTGPIYFEGNVRKGYHLDVIELQPSGIVKVGTWDEDRQYRPQRLAPTTA 408

  Fly   392 PSMFFDAGSMNVT-LVVITILETPYV-MMHYGKNFTGNERFYGFCVDILETISREVGFDYILDLV 454
            .....|....|.| ::::::...||. ::...|...||.::.|:.||:::.::.::||::.. :.
  Fly   409 QFDSVDNSLANKTFIILLSVPNKPYAQLVETYKQLEGNSQYEGYGVDLIKELADKLGFNFTF-VN 472

  Fly   455 PDRKYGAKDPETGEWNGMVAQLMKYKADLAVGSMTITYARESVIDFTKPFMNLGISILFKVPTSE 519
            ....||:.:..|.|..||:.::|..:||||:..:|||..||..:|||.|||||||:||:..|...
  Fly   473 GGNDYGSYNKSTNESTGMLREIMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKA 537

  Fly   520 PTRLFSFMNPLAIEIWIYVLIAYFLVSLCIYIVGKLSPIEWKCINACDLENISIGNQFSLTDSFW 584
            ...||:||:|.:.|:|.::..::..|||..:|:|:|||.||.....|..|...:.|||:|.:|.|
  Fly   538 TPELFTFMDPFSEEVWWFLGFSFLGVSLSFFILGRLSPSEWDNPYPCIEEPEELENQFTLGNSIW 602

  Fly   585 FTIGTFMQQSPDIYPRAMSTRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLASQT 649
            ||.|..:||..:|.|:|:|||.::|.|.||:||:|:|||||||||||.|:..:.|.:.:|||...
  Fly   603 FTTGALLQQGSEIGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDDLADNK 667

  Fly   650 E-ISYGTLDSGSTMTFFRDSVIETYKKIWRSMDNKKPSAFTTTYEDGIKRVNQG-NYAFLMESTM 712
            : :.||...:|||..||..|..|.|||:.:.| ::.|...|....:|:.||... :||||||||.
  Fly   668 DGVVYGAKKTGSTRNFFMTSAEERYKKMNKFM-SENPQYLTEDNMEGVNRVKTNTHYAFLMESTS 731

  Fly   713 LDYIVQRDCNLTQIGGLLDTKGYGIATPKGSPWRDKISLAILELQERGDIQMLYDKWWKNTDE-T 776
            ::|..:|:|||.:||..||.||||||..|..|.|.|.:.|:|||||:|.::.:.:|||..... .
  Fly   732 IEYNTKRECNLKKIGDALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKNKWWNEVGTGI 796

  Fly   777 CTRKNTSKQSKANSLGLESIGGVFVVLIAGIIVAAVVAFFEFWYNFRYNYEATPSQSVVNNKYNQ 841
            |..|..:..  |..|.:.::.|||.||:.|...|.:..... |..|                   
  Fly   797 CATKEDAPD--ATPLDMNNLEGVFFVLLVGSCCALLYGIIS-WVLF------------------- 839

  Fly   842 DGILESERNYTPPDRSFWIEIAEELRY 868
              :::...:|..|.|.   .:.||.::
  Fly   840 --VMKKAHHYRVPLRD---ALKEEFQF 861

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 111/384 (29%)
ANF_receptor 39..371 CDD:279440 100/346 (29%)
PBP2_iGluR_Kainate 402..771 CDD:270432 154/372 (41%)
Lig_chan 533..807 CDD:278489 118/276 (43%)
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 109/373 (29%)
ANF_receptor 51..382 CDD:279440 101/350 (29%)
PBP2_iGluR_Kainate 419..790 CDD:270432 154/372 (41%)
Lig_chan 551..824 CDD:278489 118/275 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462878
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
98.750

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