DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and Ir7c

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster


Alignment Length:563 Identity:104/563 - (18%)
Similarity:192/563 - (34%) Gaps:142/563 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   348 GLTG---PIQFKDGQRVQFKLDL------------------------------------------ 367
            ||||   .|.|.|..|..|:|::                                          
  Fly    86 GLTGRPIAIWFLDSLRSYFRLEMYLNQLGSPYKRNGFFLVIYTGLEDQPMESLKIMFRRLLNMYV 150

  Fly   368 ----IKLKQHSIVKVGEWTPHG--HLNITEP---SMFFD----AGSMNVT--------------- 404
                :.|::...|.:..:.|:|  |...:.|   :.|.|    |....:|               
  Fly   151 LNVNVFLQRDGTVHLYTYYPYGPHHCQSSLPVYYTAFQDLAAPANGFGLTKPLFPRKLTNMHGCE 215

  Fly   405 LVVITILETPYVMMHYGKNFTGNERFYGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEW 469
            :||.|....|||::.......|....:|....|..:::..:.|...|....|:..|...|: |.:
  Fly   216 MVVATFEHRPYVIIEDDPKTPGGRSIHGIEGLIFRSLAERMNFTIKLVEQKDKNRGEILPD-GNF 279

  Fly   470 NGMVAQLMKYKADLAVGSMTITYARESVIDFTKPFMNLGISILFK-----VPTSEPTRLFSFMNP 529
            .|::..::..:.:|.......:.||..::..:..:.:..|.::..     .|....||.|.::  
  Fly   280 TGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISPMGRLTRPFRYI-- 342

  Fly   530 LAIEIWIYVLIA--YFLVSLCIYIVGKLSPIEWKCINACDLENISIGNQFSLT-DSFWFTI--GT 589
                ||..:|::  :..|.:|:..:..|.          .|.|:.:|.:..|. ...|.::  |.
  Fly   343 ----IWSCILVSLIFGFVLICLLKITALP----------GLRNLVLGRRNRLPFMGMWASLLGGL 393

  Fly   590 FMQQSPDIYPRAMSTRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIEN-AEDLASQTEISY 653
            .:..     |:....|.|...|...:||:.|:||..|...|....|.:||:: :|.||...|...
  Fly   394 ALYN-----PQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSEVLAKDYEFRI 453

  Fly   654 GTLDSGSTMTFFRDS--------VIETYKKIWRSMDNKKPSAFTTTYEDGIKRVNQGNYAFLMES 710
                ..:..|.|:||        |:...:.::|..|...|                |....|::.
  Fly   454 ----LPALRTIFKDSMPTTNFHAVLSLEESLYRLRDEDDP----------------GITVALLQP 498

  Fly   711 TMLDYIVQRDCN---LTQIGGLLDTKGYGIATPKGSPWRDKISLAILELQERGDIQMLYDKWWKN 772
            |:..:..:...|   ||.:...|.|..........|.::.:|...|:.:...|.:......:...
  Fly   499 TVNQFDFRSGPNKRHLTVLPDPLMTAPLTFYMRPHSYFKRRIDRLIMAMMSSGIVARYRKMYMDR 563

  Fly   773 TDETCTRKNTSKQSKANSLGLESIGGVFVVLIAGIIVAAVVAF 815
            ......|:|.    :...|.:..:.|:| |..||:.:.|::.|
  Fly   564 IKRVSKRRNL----EPKPLSIWRLSGIF-VCCAGLYLVALIVF 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 15/90 (17%)
ANF_receptor 39..371 CDD:279440 10/71 (14%)
PBP2_iGluR_Kainate 402..771 CDD:270432 75/405 (19%)
Lig_chan 533..807 CDD:278489 57/290 (20%)
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 13/62 (21%)
Lig_chan 343..593 CDD:278489 57/289 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463063
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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