DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and Nmdar2

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster


Alignment Length:907 Identity:216/907 - (23%)
Similarity:362/907 - (39%) Gaps:240/907 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 DYYVEYVN-RFDSFE-------TVQKVCK-LIRVGVQAVFSPTD-------SVLATHINSICDAL 110
            ||..|..| .||...       .:..:|| .:||.|.|:....:       :..|.:...:...|
  Fly   141 DYSFEQKNIHFDMMSLTPSPTAILSTLCKEFLRVNVSAILYMMNNEQFGHSTASAQYFLQLAGYL 205

  Fly   111 DIPNIGRSAHD-----------FSINVYPSKQLVNYAFNDVIQYLNWTRFGILHEKENGIINLHQ 164
            .||.|..:|.:           ..:.:.||.:..:.|...:::...|.:|.::..:..|      
  Fly   206 GIPVISWNADNSGLERRASQSTLQLQLAPSIEHQSAAMLSILERYKWHQFSVVTSQIAG------ 264

  Fly   165 LSRSFHGEVHMRQVSRDSYVSALNE--------FKGKEIHNIIIDTNSNGISILLKNILQQQMNE 221
                           .|.:|.|:.|        ||...:::|::...|:         |.:.:|.
  Fly   265 ---------------HDDFVQAVRERVAEMQEHFKFTILNSIVVTRTSD---------LMELVNS 305

  Fly   222 YKYHYLFTSFDLETYDL----EDFKY---NFVNITSFRLVDTADVGVKQILKDIGLYSHHIFKKP 279
            .....|..:...|...:    |:.|.   |:|.:.|..:::..|             :|..|...
  Fly   306 EARVMLLYATQTEAITILRAAEEMKLTGENYVWVVSQSVIEKKD-------------AHSQFPVG 357

  Fly   280 YLNLHIKKSTILESEPALM---FDSVYVFAIGLQT-----LEQSHSLTLLNISCEEE--NSWDGG 334
            .|.:|...|:     .|||   .:::.:::.|::.     ..:...||..::|||:|  ..||.|
  Fly   358 MLGVHFDTSS-----AALMNEISNAIKIYSYGVEAYLTDPANRDRRLTTQSLSCEDEGRGRWDNG 417

  Fly   335 LSLINYLNAVEWKG-LTGP-IQF-KDGQRVQFKLDLIKLKQHSIVK------VGEW--------- 381
            .....||..|..:| |..| |:| .||.....:|.::.|:..:..|      :|.|         
  Fly   418 EIFFKYLRNVSIEGDLNKPNIEFTADGDLRSAELKIMNLRPSANNKNLVWEEIGVWKSWETQKLD 482

  Fly   382 ------------TPHG-----HLNITEPSMFFDAGSMNVTLVVITILETPYVMMHYGKNFTG--- 426
                        .|.|     ||.||    |.:              |.||:.:......:|   
  Fly   483 IRDIAWPG
NSHAPPQGVPEKFHLKIT----FLE--------------EAPYINLSPADPVSGKCL 529

  Fly   427 --------------------------NERFY----GFCVDILETISREVGFDYILDLVPDRKYGA 461
                                      ||.||    |||:|:||..:.|:||.|.|..|.|.|:|.
  Fly   530 MDRGVLCRVAADHEMAADIDVGQAHRNESFYQCCSGFCIDLLEKFAEELGFTYELVRVEDGKWGT 594

  Fly   462 KDPETGEWNGMVAQLMKYKADLAVGSMTITYARESVIDFTKPFMNLGISILFKVPTS--EPTRLF 524
            .  |.|:|||::|.|:..|.|:.:.|:.|...||:|:||::|||..||:|:....|.  .||   
  Fly   595 L--ENGKWNGLIADLVNRKTDMVLTSLMINTEREAVVDFSEPFMETGIAIVVAKRTGIISPT--- 654

  Fly   525 SFMNPLAIEIWIYV-LIAYFLVSLCIYIVGKLSPIEWKCINACD----LENISI-GNQFSLTDSF 583
            :|:.|.....|:.| ::|....:..|::      .||...:..|    |:|.:: ..:|||..::
  Fly   655 AFLEPFDTASWMLVGIVAIQAATFMIFL------FEWLSPSGYDMKLYLQNTNVTPYRFSLFRTY 713

  Fly   584 WFTIGTFMQQSPDI-YPRAMSTRIISSTWGFFSLIIVASYTANLAAFLTT------------ERM 635
            |.......|.:..: .||..::|.:::.|..|:::.:|.||||||||:.|            .|:
  Fly   714 WLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLAIYTANLAAFMITREEFHEFSGLNDSRL 778

  Fly   636 INPIENAEDLASQTEISYGTLDSGSTMTFFRDSVIETYKKIWRSMDNKKPSAFTTTYEDGIKRVN 700
            ::|..:      :....:||:....|     ||.|..|..:   |.|.......|:..||:..|.
  Fly   779 VHPFSH------KPSFKFGTIPYSHT-----DSTIHKYFNV---MHNYMRQYNKTSVADGVAAVL 829

  Fly   701 QGNY-AFLMESTMLDYIV--QRDCNLTQIGGLLDTKGYGIATPKGSPWRDKISLAILELQERGDI 762
            .||. :|:.:.|:|||:|  ..||.|..:|......|||:|..:.|.:....:..:||.:..||:
  Fly   830 NGNLDSFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGLAFSRNSKYVQMFNKRLLEFRANGDL 894

  Fly   763 QMLYDKWWKNTDETCTRKNTSKQSKANSLGLESIGGVFVVLIAGIIVAAVVAFFEFWYNFRY 824
            :.|...|...   || |....:...::.|.||.....|::|:|||::||::...|..| |:|
  Fly   895 ERLRRYWMTG---TC-RPGKQEHKSSDPLALEQFLSAFLLLMAGILLAALLLLLEHVY-FKY 951

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 78/412 (19%)
ANF_receptor 39..371 CDD:279440 71/363 (20%)
PBP2_iGluR_Kainate 402..771 CDD:270432 117/425 (28%)
Lig_chan 533..807 CDD:278489 76/295 (26%)
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 75/396 (19%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 124/452 (27%)
Lig_chan 665..928 CDD:278489 73/286 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463096
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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