DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ekar and GRID2

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:XP_011530195.2 Gene:GRID2 / 2895 HGNCID:4576 Length:1035 Species:Homo sapiens


Alignment Length:831 Identity:232/831 - (27%)
Similarity:404/831 - (48%) Gaps:121/831 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 QKVCKLIRVGVQAVFSPTDSVLATHINSICDALDIPN--IGRSA----------------HDFSI 124
            ||.|:|:..|:.|:.|......|..:.|:.||:.||:  |.||.                .|:::
Human    92 QKTCELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTAGTPRSGCGLTRSNRNDDYTL 156

  Fly   125 NVYPSKQLVNYAFNDVIQYLNWTRFGILHEKENGIINLHQL--SRSFHG-EVHMRQVSRD----- 181
            :|.|...|.:.....|.:|. |.:|.|.::.|..|..:.:.  ..|..| :|.:::|..:     
Human   157 SVRPPVYLHDVILRVVTEYA-WQKFIIFYDSEYDIRGIQEFLDKVSQQGMDVALQKVENNINKMI 220

  Fly   182 ------SYVSALNEFKGKEIHNIIIDTNSNGISILLKNILQQQMNEYKYHYLFTSFDLETYDLED 240
                  ..:..||.:: ..:...|:..|.......:..:::..:..:..|::..:.::...|:::
Human   221 TTLFDTMRIEELNRYR-DTLRRAILVMNPATAKSFITEVVETNLVAFDCHWIIINEEINDVDVQE 284

  Fly   241 FKYNFVNITSFRLVDTADVGVKQILKDIGLYSHHIFKKPYLNLHIKKSTI----------LESEP 295
                        || ...:|...|::.......:|.::.:...|...||:          :|...
Human   285 ------------LV-RRSIGRLTIIRQTFPVPQNISQRCFRGNHRISSTLCDPKDPFAQNMEISN 336

  Fly   296 ALMFDSVYVFAIGL-QTLEQSHSLTLLNISCEEENS--WDGGLSLINYLNAVEWKGLTGPIQFKD 357
            ..::|:|.:.|... :.||.....::.::||..:||  |.||.|::..:......||||.::|.:
Human   337 LYIYDTVLLLANAFHKKLEDRKWHSMASLSCIRKNSKPWQGGRSMLETIKKGGVSGLTGELEFGE 401

  Fly   358 ---GQRVQFKL----------------DLIKLKQHSIVKV----GEWTPHGHLNITEPSMFFDAG 399
               ...|.|::                :.|: .|.|..|:    |.|.|...||.:......:..
Human   402 NGGNPNVHFEILGTNYGEELGRGVRKNERIR-PQGSTGKIWPQLGCWNPVTGLNGSLTDKKLENN 465

  Fly   400 SMNVTLVVITILETPYVMMHYGKNFTGN-ERFYGFCVDILETISREVGFDYILDLVPDRKYGAKD 463
            ...|.|.|:|:||.|:||:  .:|..|. :::.||.:|:|:.:|..:||:|.:.:.||.|||:..
Human   466 MRGVVLRVVTVLEEPFVMV--SENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQ 528

  Fly   464 PETGEWNGMVAQLMKYKADLAVGSMTITYARESVIDFTKPFMNLGISILFKVPTSEPT-RLFSFM 527
             |.|.|||:|.:|:..:||:.:.::|||..||:|:|||..:|:..:.:|.:  .:|.| .:|:.:
Human   529 -EDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLR--RAEKTVDMFACL 590

  Fly   528 NPLAIEIWIYVLIAYFLVSLCIYIVGKLSPIEWKCINACDLENISIGNQFSLT--DSFWFTIGTF 590
            .|..:.:|..:.....||.|.:|::..|:|           ..:.:|:..|.|  :|.||..|:|
Human   591 APFDLSLWACIAGTVLLVGLLVYLLNWLNP-----------PRLQMGSMTSTTLYNSMWFVYGSF 644

  Fly   591 MQQSPDIYPRAMSTRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLASQTEISYGT 655
            :||..::....::||::...|..|:||:::|||||||||||..|:.:.|::.:||:.||||.|||
Human   645 VQQGGEVPYTTLATRMMMGAWWLFALIVISSYTANLAAFLTITRIESSIQSLQDLSKQTEIPYGT 709

  Fly   656 -LDSG--------STMTFFRDSVIETYKKIWRSMDNKKPSAFTTTYED--GIKRVNQGNYAFLME 709
             |||.        ....|.|||:   |.::|| |.|:...:.....|.  ||::|..|||||:.:
Human   710 VLDSAVYEHVRMKGLNPFERDSM---YSQMWR-MINRSNGSENNVLESQAGIQKVKYGNYAFVWD 770

  Fly   710 STMLDYIV--QRDCNLTQIGGLLDTKGYGIATPKGSPWRDKISLAILELQERGDIQMLYDKWWKN 772
            :.:|:|:.  ..||:...||..:..:|||||...|||:||..|..|||||:.||:.:|..|||..
Human   771 AAVLEYVAINDPDCSFYTIGNTVADRGYGIALQHGSPYRDVFSQRILELQQNGDMDILKHKWWPK 835

  Fly   773 TDETCTRKNTSKQSKANSLGLESIGGVFVVLIAGIIVAAVVAFFEFWYNFR 823
            ..:.....:...:.|..:|.::|..|||.:|.|||:::..:|..|.|:|.|
Human   836 NGQCDLYSSVDTKQKGGALDIKSFAGVFCILAAGIVLSCFIAMLETWWNKR 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 73/377 (19%)
ANF_receptor 39..371 CDD:279440 67/356 (19%)
PBP2_iGluR_Kainate 402..771 CDD:270432 141/385 (37%)
Lig_chan 533..807 CDD:278489 102/288 (35%)
GRID2XP_011530195.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S6275
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.860

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