DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and Grin2c

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_036707.3 Gene:Grin2c / 24411 RGDID:2739 Length:1250 Species:Rattus norvegicus


Alignment Length:802 Identity:195/802 - (24%)
Similarity:334/802 - (41%) Gaps:203/802 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 HGEVHMRQVSRDSYVSALNEFKGKEIHNIIIDTNSNGISILLK-------------------NIL 215
            ||.|....|..:: |:.|.:|...:.|..|:.. |.|.:::|.                   .:|
  Rat   104 HGIVFEDNVDTEA-VAQLLDFVSSQTHVPILSI-SGGSAVVLTPKEPGSAFLQLGVSLEQQLQVL 166

  Fly   216 QQQMNEYKY------------HYLFTSFDLE-TYDLEDFKYNFVNITSFRLVD--TADVG----- 260
            .:.:.||.:            |.||    || ...:.|..|     .|:||:|  |.::|     
  Rat   167 FKVLEEYDWSAFAVITSLHPGHALF----LEGVRAVADASY-----LSWRLLDVLTLELGPGGPR 222

  Fly   261 --VKQILKDI------------------------GLYS-HHIFKKPYLNLHIKKSTILESEPAL- 297
              .:::|:.:                        ||.. .|::..|.|.|   .||  ::.||. 
  Rat   223 ARTQRLLRQVDAPVLVAYCSREEAEVLFAEAAQAGLVGPGHVWLVPNLAL---GST--DAPPAAF 282

  Fly   298 -------------------MFDSVYVFAIGLQTLEQSHSLTLLNISCEEENSWDGGLS-----LI 338
                               :.|.|.:.|:|..:..:.:.  .|.....:..|..|.:|     ..
  Rat   283 PVGLISVVTESWRLSLRQKVRDGVAILALGAHSYRRQYG--TLPAPAGDCRSHPGPVSPAREAFY 345

  Fly   339 NYLNAVEWKGLTGPIQFKD------GQRVQFKLDLIKLKQHSIVK-VGEWTPHGHLNITEPSMFF 396
            .:|..|.|:|       :|      |..|:..:.:|.|.:|.:.: ||.| .||.|.:..|....
  Rat   346 RHLLNVTWEG-------RDFSFSPGGYLVRPTMVVIALNRHRLWEMVGRW-DHGVLYMKYPVWPR 402

  Fly   397 DAGSMNVT-----LVVITILETPYVMMHYGKNFTG-------------NERF------------- 430
            .:.|:...     |.|.|:.|.|:|::......||             |..|             
  Rat   403 YSTSLQPVVDSRHLTVATLEERPFVIVESPDPGTGGCVPNTVPCRRQSNHTFSSGDLTPYTKLCC 467

  Fly   431 YGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYKADLAVGSMTITYARE 495
            .|||:|||:.:::.|.|.|.|.||.:.|:|.:  ..|.||||:.::...:||:|:||:||...|.
  Rat   468 KGFCIDILKKLAKVVKFSYDLYLVTNGKHGKR--VRGVWNGMIGEVYYKRADMAIGSLTINEERS 530

  Fly   496 SVIDFTKPFMNLGISILFKVP--TSEPTRLFSFMNPLAIEIWIYVLI-AYFLVSLCIYIVGKLSP 557
            .:|||:.||:..|||::....  |..|:   :|:.|.:..:|:.:.: ...:|::.:::....||
  Rat   531 EIIDFSVPFVETGISVMVSRSNGTVSPS---AFLEPYSPAVWVMMFVMCLTVVAITVFMFEYFSP 592

  Fly   558 IEWKCINACDLENISIGNQ-----FSLTDSFWFTIG-TFMQQSPDIYPRAMSTRIISSTWGFFSL 616
            :.:.       :|::.|.:     |::..|.|.... .|....|...||..:::|:...|.||::
  Rat   593 VSYN-------QNLTKGKKPGGPSFTIGKSVWLLWALVFNNSVPIENPRGTTSKIMVLVWAFFAV 650

  Fly   617 IIVASYTANLAAFLTTERMINPIENAEDLASQ------TEISYGTLDSGSTMTFFRDSVIETYKK 675
            |.:||||||||||:..|:.|:.:....|...|      ....:||:.:|||....|.:       
  Rat   651 IFLASYTANLAAFMIQEQYIDTVSGLSDKKFQRPQDQYPPFRFGTVPNGSTERNIRSN------- 708

  Fly   676 IWRSMDNKKPSAFTTTYEDGIKRVNQGNY-AFLMESTMLDYIVQRD--CNLTQIGG--LLDTKGY 735
             :|.|..........:.||.:..:..|.. ||:.::.:|:|:..:|  |.|..||.  :..|.||
  Rat   709 -YRDMHTHMVKFNQRSVEDALTSLKMGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGY 772

  Fly   736 GIATPKGSPWRDKISLAILELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSLGLESIGGVF 800
            |||..|.|.|:..|.||:|:|...|:.|.|...|...   .|  :|...:..::.|.::::.|||
  Rat   773 GIAMQKDSHWKRAIDLALLQLLGDGETQKLETVWLSG---IC--QNEKNEVMSSKLDIDNMAGVF 832

  Fly   801 VVLIAGIIVAAVVAFFE---FW 819
            .:|:..:.:|.:|..:|   :|
  Rat   833 YMLLVAMGLALLVFAWEHLVYW 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 62/315 (20%)
ANF_receptor 39..371 CDD:279440 55/297 (19%)
PBP2_iGluR_Kainate 402..771 CDD:270432 119/419 (28%)
Lig_chan 533..807 CDD:278489 77/291 (26%)
Grin2cNP_036707.3 PBP1_iGluR_NMDA_NR2 41..397 CDD:380601 63/318 (20%)
PBP2_iGluR_NMDA_Nr2 413..813 CDD:270436 120/424 (28%)
NMDAR2_C 850..>925 CDD:402274 1/5 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350208
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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